Geobacter sp. FeAm09: FO488_14670
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Entry
FO488_14670 CDS
T07988
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
gef
Geobacter sp. FeAm09
Brite
KEGG Orthology (KO) [BR:
gef00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
gef03016
]
FO488_14670
Enzymes [BR:
gef01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
FO488_14670
Transfer RNA biogenesis [BR:
gef03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
FO488_14670
Prokaryotic type
tRNA splicing ligases
FO488_14670
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
QEM69276
LinkDB
All DBs
Position
complement(3119955..3121412)
Genome browser
AA seq
485 aa
AA seq
DB search
MSLPPQLRRISPTLWELPVSYKDGMLVPARIVATEGLLAGMEAGVFDQAANVACLPGILK
YAYCMPDGHWGYGFPIGGVAAMDPVSGVISPGGIGFDINCGMRLVLTSLTEEEVRPRLHQ
LVDLMFARIPTGVGCTGFVRCSRAEFRQVLERGSRWCREKGYAWPEDLEMTEEGGCFGGA
DPDAVSDKAIERGFDQIGTLGSGNHYCEIQVARPENIYDAATARAFGITIPNQVVVMFHC
GSRGFGHQVATDYLQSFLRVMTAKYGIRLPDRELACAPFSSPEGQAYFAAMKCAVNMGFA
NRQVILHRLREVFSQVFHRSPEELGMRMVYDVAHNTAKLERHLVDGTLREVLVHRKGATR
SFGPGMAGIPACYRETGQPVIIGGSMETGSYLLAGAAGAAATFFTTAHGSGRTMSRHQAR
KMVKGQKLLGEMAQRGIYVRTDSWGGLAEEAGFAYKDIDLVAAATEEAGLSRRVVKLVPI
GNIKG
NT seq
1458 nt
NT seq
+upstream
nt +downstream
nt
atgtcacttcctccccaactgcgcagaatctctcccacgttgtgggaactccccgtgtca
tacaaggacggcatgctggtcccggcccggatcgtcgccacggaagggctgctggccggc
atggaggcgggggtcttcgaccaggcggccaacgtggcctgcctgcccggcatcctgaaa
tacgcctactgcatgcccgacggccactgggggtacggcttccccatcggcggcgtggcg
gccatggacccggtgagcggcgtgatctcccccggcgggatcggcttcgacatcaactgc
ggcatgcgcctggtcctgacctccctgaccgaggaggaggtgcggccgcgcctgcaccag
ctggtggacctgatgttcgcccgcatccccaccggggttggctgcaccggcttcgtgcgc
tgctcccgcgccgagtttcgccaggtgctggagcggggttcccgctggtgccgggaaaag
ggctacgcctggcccgaggacctggagatgaccgaggaggggggctgcttcggcggcgcc
gaccccgacgcggtgagcgacaaggccatcgagcggggcttcgaccagatcggcaccctg
ggctccggcaaccactactgcgagatccaggtggcccggcccgaaaacatctacgatgcc
gccacggcccgcgccttcggcatcaccatccccaaccaggtggtggtcatgttccattgc
ggcagccgcggcttcggccaccaggtggccaccgactacctgcaaagcttcctgcgggtc
atgaccgcaaagtacggcatcaggctccccgaccgggaactggcctgcgccccgttcagt
tctcccgaggggcaggcctatttcgcggccatgaaatgcgccgtcaacatgggcttcgcc
aaccgccaggtgatcctgcaccgtctgcgcgaggtgttctcccaggtgttccaccgttcc
cccgaggagttggggatgcgcatggtctacgacgtggcccacaacacggcaaagctggaa
cggcacctggtggacggcaccctgcgggaggtgctggtgcaccgcaagggggccacccgc
tcgttcggccccggcatggccggcatccccgcgtgctaccgcgagaccggccagccggtg
atcatcggcggcagcatggagaccggctcctacctgttggcgggtgcggcgggggcggcg
gccaccttcttcaccacggcccacggcagcgggcgcaccatgagccgccaccaggccagg
aagatggtcaaggggcagaagctcctgggcgaaatggcacagcgcggcatctacgtgcgc
accgattcctggggcggtttggcggaggaggccggctttgcctacaaggatatcgacctg
gtcgccgcggccacggaagaggccggattgtcccggcgggtggtcaagctggtgcccatc
ggcaacatcaagggatag
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