Geobacter sp. FeAm09: FO488_18630
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Entry
FO488_18630 CDS
T07988
Name
(GenBank) HD domain-containing protein
KO
K03698
3'-5' exoribonuclease [EC:3.1.-.-]
Organism
gef
Geobacter sp. FeAm09
Brite
KEGG Orthology (KO) [BR:
gef00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gef03019
]
FO488_18630
Messenger RNA biogenesis [BR:
gef03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
FO488_18630
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Ortholog
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GFIT
Motif
Pfam:
HD
tRNA_anti-codon
HDOD
Cas3_HD
HSBP1
TraI_2
DUF6414
tRNA_anti_2
Motif
Other DBs
NCBI-ProteinID:
QEM69976
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Position
3964403..3965512
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AA seq
369 aa
AA seq
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MAKQFVADIKDRDPVSAVFLVKEKIMAMAKNGKPYMNLRLMDKSGEVDAKVWDNVDVLDK
LFERDDFVQVRGKASVYLNKMQVVVAEITRIPEEAVNLADFLPESPRDKDDMSRELDALV
AAIADPHLKGLMDTFLADEPLMAKYRTAPAAKGMHHVYLGGLMEHSLSVARLVKTIVPLY
EGINEDLLVVGALLHDVGKIHEMSYERAFDYTDEGKLLGHITIGVELVEDKIRTVEGFPR
ELAMLLKHMLLSHHGQYEYGSPKRPKTVEATILNYLDDMDSKINGIQAHIARESASSSRW
TSHHRLYDRYFFKGNGMDGEQEVVHEECEEQAPEEPVIQRESPVRPTQREEKPHFSNQPL
KALENLDLF
NT seq
1110 nt
NT seq
+upstream
nt +downstream
nt
gtggcaaaacaattcgtagccgacatcaaggaccgggacccggtctccgccgttttcctg
gtcaaggaaaagatcatggccatggccaagaacggcaaaccctatatgaacctgcgcctc
atggacaagagcggcgaggtggacgccaaggtctgggacaacgtggacgttctggacaag
ctcttcgagcgggacgatttcgtgcaggtgcgcggcaaggcgtcggtctatctgaacaag
atgcaggtggtggtggccgagatcacccggattcccgaggaggcggtcaacctggccgac
tttctgcccgaatccccccgggacaaggacgacatgtcccgggagttggatgcgctggtg
gccgccattgccgatccgcacctcaaggggctcatggatacgttcctggcggatgaaccg
ctcatggccaagtaccgcacggccccggcggccaaggggatgcaccacgtgtacctgggg
gggctcatggagcattccctctcggtggcccggctggtgaagaccattgtgccgttgtac
gaggggatcaacgaggacctgctggtggtgggggcgctgctgcacgatgtgggcaagatc
cacgagatgagctacgagcgcgccttcgactatacggacgaggggaagcttttggggcac
atcaccatcggcgtggaactggtggaggacaagattcgcacggtggaggggttcccgcgg
gagctggccatgctgctcaagcacatgctcctctcccaccacggccagtacgagtacggt
tcgcccaagcgccccaagaccgtggaggccaccatcctcaactacctggacgatatggac
tccaagatcaacggcatccaagcccacatcgcccgggaaagcgccagcagttcccgctgg
acctcccaccaccggctctacgaccgctatttcttcaagggcaacggcatggacggcgag
caggaggtggtgcatgaggagtgcgaagagcaggcgccggaggagccggtcatccagcgg
gaatcccccgttcgcccgacgcagcgggaggaaaagccgcacttcagcaatcagcctctg
aaggcgttggagaacctggacctgttctag
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