Granulicatella elegans: LK443_05255
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Entry
LK443_05255 CDS
T09296
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
geg
Granulicatella elegans
Pathway
geg03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
geg00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
LK443_05255 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
geg03021
]
LK443_05255 (rpoC)
03400 DNA repair and recombination proteins [BR:
geg03400
]
LK443_05255 (rpoC)
Enzymes [BR:
geg01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
LK443_05255 (rpoC)
Transcription machinery [BR:
geg03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
LK443_05255 (rpoC)
DNA repair and recombination proteins [BR:
geg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
LK443_05255 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_3
RNA_pol_Rpb1_2
RNA_pol_Rpb1_4
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
UEA30710
LinkDB
All DBs
Position
1045958..1049620
Genome browser
AA seq
1220 aa
AA seq
DB search
MIDVNNFESMQIGLASPDKIREWSNGEVTKPETINYRTLKPERDGLYCEKIFGPTKDLEC
SCGKLKKINNKGKVCDRCGVEVTRSKVRRERMGHIELAAPVSHVWYFKGIPSRMGLVLDM
SPRALEEIIYFASYVVIDAGDTTLMKKQLLSEREYREKRMEFGTRFHAAMGAEAVQELLN
NVDLEAEIAELKEELKTAQGQKRTRAIRRLDILDAFRESGNKPGWMVMDVIPVIPPDLRP
MVQLEGGRFATSDLNDLYRRVINRNNRLKRLLELNAPRIIVQNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPNLKMYQCGLPKE
MAIELFKPFVMKELVEREIAGNIKSAKRKIERFDDDIWAVLEEVIREHPVLLNRAPTLHR
LGIQAFEPTLVEGRAIRLHPLVCEAYNADFDGDQMAVHVPLSQEAQAEARLLMLAAQNIL
NPKDGKPVVTPSQDMVLGNYYLTLEQEGRVGEGMYFKDMNEAMLAYQNGYVHLHSRIAIH
ASALPHKPFTEWQKERMLVTTVGKLLFNEIMPDEFPYLNEPSMENLEVATPDKYFLEPGS
NIKEEIEKRPIVLPFKKKNLGQIIAEVFKRFHITETSMMLDRMKDLGYKYSTRAGLTVGI
ADISVAGNKKEILSDAHNQVDEISKLFRRGLITDDERYERVIETWNAAKDEIQSALTKTL
GSRNPIFMMSDSGARGNISNFTQLAGMRGLMAAPNGKIMELPVTSNFREGLTVMEMFLST
HGARKGMTDTALKTADSGYLTRRLVDVAQDVIIRETDCGSDRGLTISAIREGNEMIETLE
ERMIGRYAQRSVKDPVTGEVFVGHNELITEDIARKIIDAGIEEVTIRSAFTCDTKHGVCK
HCYGRNLATGSEVEVGEAVGTIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRIQEIF
EARNPKGGATITEVTGEVVSIDENAGSRTKEITIKGATDTRTYTVPFTARLNVEEGQTIH
RGEPLTSGSIDPKELLRVRDVLSVENYLLREVQKVYRMQGVEIGDKHVEVMVRQMLRKVR
VMDPGSTEILPGTLLDIADFTERNRSAIMNGEVPATARPVLLGITKASLETNSFLSAASF
QETTRVLTDASIRGKKDHLLGLKENVIIGKIIPAGTGMARYRNMETSTSTPVQTEEFVEA
TEDLAEGIVAEGTVRETTEA
NT seq
3663 nt
NT seq
+upstream
nt +downstream
nt
ttgatagatgtaaataattttgaaagtatgcaaattggtttagcgtctcctgataagatt
cgtgaatggtcaaatggtgaagtaaccaaaccagaaacaatcaactaccgtactttaaaa
ccagaacgtgatggtctatactgtgaaaagatttttggaccaacaaaagatttagaatgt
tcatgtggtaaattaaagaaaattaacaataaaggaaaagtgtgtgatcgctgtggcgtt
gaagtaactcgttcaaaagttcgtcgtgaacgtatgggacatatcgaattagctgcgcca
gtatcacatgtttggtactttaaaggtattcctagccgtatgggacttgtgttagacatg
agtcctcgtgctttggaagaaatcatttattttgcaagctatgttgttatcgatgctggt
gacacaacattgatgaaaaaacaattattaagtgaacgtgaataccgtgaaaaacgtatg
gaattcggaactcgtttccacgcagcaatgggtgctgaagcagttcaagaattattaaac
aacgttgacttagaagctgaaattgcagaattaaaagaagagttaaaaacagctcaagga
caaaaacgtactcgtgcaattcgtcgtttagatattttagatgctttccgtgaatcagga
aataaaccaggttggatggtaatggatgttattccagttatcccaccagatttacgtcca
atggttcaattagaaggtggacgttttgcaacaagtgacttaaatgatttataccgtcgt
gtaatcaaccgtaataatcgtctaaaacgtttattagaattaaatgctccacgtatcatc
gttcaaaatgaaaaacgtatgttacaagaagcagtagatgctttaatcgacaatggtcgt
cgtggtcgtccagtaactggaccaggtaaccgtccgttgaaatcattaagtcatatgctt
aaagggaaacaaggtcgtttccgtcaaaacttacttggtaaacgtgtagactactcagga
cgttctgtaatcgtagtaggaccaaacttgaagatgtatcaatgtggtttaccaaaagaa
atggctattgaattattcaaaccattcgtcatgaaagaattagtagaacgtgaaattgct
ggaaatattaagagtgcaaaacgtaaaattgaacgttttgacgatgatatttgggcggtt
ttagaagaagttattcgtgaacacccagttctattaaatcgagcacctactcttcacaga
ttagggattcaagcattcgaaccaactttagtagaaggtcgtgcgattcgtcttcaccca
ttagtgtgtgaggcctacaatgccgacttcgatggagaccaaatggcggttcacgtgcca
ctttcacaagaagctcaagcagaagctcgtttattaatgttagcggcacaaaatatctta
aaccctaaagatggaaaaccagtagtaactccatctcaagacatggttttaggaaactat
tacttaacattagaacaagaaggtcgtgttggagaaggtatgtacttcaaagacatgaac
gaagcaatgttagcataccaaaatggatatgttcatttacacagccgtattgcaattcat
gcaagtgcgcttcctcataaaccatttacagaatggcaaaaagaacgtatgttagtgact
acagttggtaaattattattcaatgaaattatgcctgacgaattcccttacttaaatgaa
ccatcaatggaaaacttagaagtagctactccagataaatacttcttagaaccaggttca
aatattaaggaagaaattgaaaaacgtccaatcgttttaccattcaagaagaaaaactta
ggtcaaatcattgcggaagtcttcaaacgtttccacattacagaaacatcaatgatgtta
gaccgtatgaaagacttaggatataaatattcaactcgtgctggattaacagtagggatt
gcagatatttctgttgcaggaaataaaaaagaaattctttctgatgcgcataaccaagtt
gatgaaatttctaaattattccgccgtggtttgattacagatgacgaaagatatgaacgt
gttatcgaaacatggaatgctgcaaaagatgaaatccaaagtgcattaacgaaaacactt
ggttcccgtaacccaatcttcatgatgagtgactctggagcccgtggtaacatctctaac
tttacacagttagcggggatgcgtggattgatggcagctccaaatggtaaaatcatggaa
ttaccagtaacatcaaacttccgtgaaggtttaacggttatggagatgttcttatcaact
cacggtgcccgtaaagggatgacggatacagccttgaagacagccgactcaggttactta
actcgtcgtttagtagacgtagctcaagacgtaattatccgtgaaacagactgtggttct
gatcgtggtttaacaatttcagctatccgtgaaggaaatgaaatgattgaaacattagaa
gaacgtatgattggacgttatgcacaacgttctgtaaaagatccagtaactggtgaagta
tttgttggtcacaatgaattaattacagaagatattgctcgtaaaatcattgatgcaggt
attgaagaagtaacaattcgttctgcatttacatgtgatacaaaacatggtgtatgtaaa
cattgttatggacgtaacttagcaacaggttcagaagtagaagttggggaagcagttggt
acaattgccgctcaatctatcggggaacctggtactcagttaacaatgcgtactttccat
accggtggggtagccggagacgatattactcaaggtttacctcgtatccaagaaatcttc
gaagctcgtaaccctaaagggggagcaacaattacagaagtaacaggtgaagttgtatcg
attgatgaaaatgcgggaagccgtacgaaagagatcacaatcaaaggggcaacagataca
cgtacgtatactgttccatttacagctcgcttaaatgttgaagaaggacaaacaatccat
cgtggtgaaccgttaacatctggttctatcgatccaaaagaattattacgtgttcgtgat
gtgttatcagtagaaaactacctattacgtgaagtacaaaaagtataccgtatgcaaggg
gtagaaatcggcgataaacacgttgaggtaatggttcgtcaaatgttacgtaaagttcgt
gtaatggatccaggttcaactgaaattttaccaggaacattattagatatcgcagacttt
actgaacgtaaccgttctgcaattatgaatggtgaagttcctgcgactgcacgtccagta
ttacttggtattacaaaagcttcattagaaacaaacagtttcttatctgcagcttcattc
caagaaactactcgtgtgttaacagacgcatctattcgtggtaagaaagatcacttactt
ggacttaaggaaaatgttatcattggtaagattattcctgctggtacaggtatggctcgt
tatcgtaatatggaaacaagcacttctacaccagttcaaacagaagaattcgttgaagct
actgaagacttagcggaaggaattgttgctgaaggaacagtgagagaaacgacagaagct
taa
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