Granulicatella elegans: LK443_05340
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Entry
LK443_05340 CDS
T09296
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
geg
Granulicatella elegans
Pathway
geg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
geg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LK443_05340 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
geg03019
]
LK443_05340 (rnr)
03016 Transfer RNA biogenesis [BR:
geg03016
]
LK443_05340 (rnr)
Enzymes [BR:
geg01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
LK443_05340 (rnr)
Messenger RNA biogenesis [BR:
geg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LK443_05340 (rnr)
Transfer RNA biogenesis [BR:
geg03016
]
Prokaryotic type
tRNA degradation factors
LK443_05340 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
S1
OB_RNB
S1_RRP5
RNase_II_C_S1
S1CSD-TOTE-2
CSD
Motif
Other DBs
NCBI-ProteinID:
UEA30726
LinkDB
All DBs
Position
1063690..1066047
Genome browser
AA seq
785 aa
AA seq
DB search
MRESLRTILVSFFEEYAPESFYVKEISEHFGMNQSQDFKILVKELAALEEEGILELNRNG
KFGLNPLNQTLKGTYRANDKGFGFVTVVEGEPDIFIPRGDTMSAMDGDEVELVITEPADS
YRQRSATGKIVQIIQRNTTQVVGIYTRFSSETAEDTGYCGEVVVKDKKLAGTRCLIRPNG
LHPVDGTVVIVELTKYTNEKNRSSLEGIVVKEIGYKDAVGMDILMILQQLHIPTEFPQEV
IDQANLVPEVITDEDRQGRKDLREQLTVTIDGADAKDLDDAVALTKREDGTFELTVSIAD
VSYYVTENSAIDREAFERGTSVYLTDRVVPMLPQRLSNGICSLHPHEERLTMSCRMEIDR
SGTIYQYEIFPSVIRSDMRLTYSLVNELFEKKEVEIPEEIQQMLLEMKELHHILERRRKE
RGAIDFETHEAKIIVDEQGVPIDIQIRERGIAERLIESFMLAANETVAMHYQRKNVPFIY
RVHEQPQQEKMQRFLEFVTAFGINIKGTSETISPKKLQKALDEVKGETYEAVVSTMMLRS
MKQAKYDITPSGHYGLAAEDYTHFTSPIRRYPDLIVHRMIRQYEGSGNFLSKQQEELNAS
NLERIADQSSKMERLAVQAEREVDAMKKAEFMADKIGQEFEGIVSSVTKFGMFVELSNTV
EGLVHITHMNQDYFNFIESHMVLIGERTGVTYRIGDRVKVKLIKVDVEAHEIDFILSTDN
ADLITQNKRPSKGKEAPKKVAKKESRSKKSKKSSKNKGRQQFKAQAKQKRRKNIRKENSD
AKRNR
NT seq
2358 nt
NT seq
+upstream
nt +downstream
nt
atgagagaatcattacgaacgattttggtgtctttttttgaagagtatgcaccagaaagt
ttttacgtaaaagaaattagtgaacattttgggatgaatcagtctcaagattttaaaata
ttagtgaaagaattagccgctttagaagaagaaggcattttagaattaaatcgtaacgga
aagtttggtttgaatcctttgaatcaaacattaaaaggaacgtatcgtgcaaatgacaag
ggatttggctttgttactgtagtcgaaggggaaccagatattttcattcctcgtggagat
acaatgagtgcgatggatggagatgaagtagaactagtaattacggaacccgccgatagt
tatcgtcaacgatctgctacggggaaaattgttcaaattattcaacgcaatacgactcaa
gtggtaggaatttatactcgattcagttcagaaactgcagaagatacagggtattgtggt
gaagtagttgtcaaagataaaaaattagcaggtactcgttgcttaattcgtccaaatgga
ttgcatccagtagatggaacagtagtcattgtagaattaacaaaatacacgaatgaaaaa
aatcgttcttcattagaaggaattgttgtcaaagaaattgggtataaagatgccgttgga
atggatattttaatgattttgcaacaattacatattccaacagaatttccgcaagaagtg
atcgatcaggcaaatcttgttcctgaagtgattacagatgaagatcgacaagggcgtaaa
gatttacgggaacaattaactgttaccattgacggggcagatgccaaagacttagatgat
gctgttgcgctaacaaaacgtgaagatggaacatttgaattaaccgtttcgattgccgat
gtatcgtattatgtgacagaaaattcagcaatcgatagagaagcatttgaacgtggaaca
agtgtgtatttaacagaccgtgttgttccaatgttgccacaacgattatcaaatggaatt
tgttcattacatccacatgaagaacgattaacgatgtcttgccgcatggaaattgaccga
agtggaacgatttatcaatatgagattttcccaagtgtcattcgttcagatatgcgatta
acatatagtttagtgaatgaattgtttgagaaaaaagaagttgaaattccagaagaaatt
cagcaaatgttgttggagatgaaagaattacatcatattttagaaagacgaagaaaagaa
cgtggagcgattgattttgaaacgcatgaagcaaaaattattgtggatgaacaaggcgta
ccgattgacattcaaattcgtgagcgtggaattgcagaacgattaattgaatcgtttatg
ttagcggctaatgaaacggttgcgatgcattatcaacgaaaaaatgttccgtttatctac
cgtgtccatgaacagccacaacaagaaaaaatgcaacgtttcttagaatttgtcacagca
tttggcattaatattaaaggaacgagcgaaaccattagtccgaaaaaactgcaaaaggcc
ttagatgaagttaaaggagaaacgtatgaagcagttgtatcgaccatgatgctacgttct
atgaaacaagctaaatatgatattacaccttctggacattatggattagcagcagaagat
tatactcactttacttcaccgattcgtcgttatccagacttaattgtccatcgtatgatt
cgtcaatacgaaggcagtggaaatttcttatcgaagcaacaagaggaattgaatgcttct
aatttagagagaattgcggatcaatcgagcaaaatggaacgtttagcagttcaagcagaa
cgtgaagtagatgcgatgaaaaaagctgaatttatggcagataagattggacaagagttt
gaagggattgttagttctgtaaccaaattcggaatgtttgtagaattgtcaaataccgta
gaaggtttagtgcatattacgcatatgaatcaagattactttaactttattgaaagtcat
atggttttaattggtgagagaacaggagtgacttatcgaattggagatcgtgttaaagta
aaattaattaaagtcgatgtagaagcacatgaaattgattttattttatcaacagataat
gcagatttgattactcaaaataaacgtccttctaaagggaaagaagcgcctaagaaagtt
gcgaaaaaagaaagcagaagtaaaaaatcgaagaagtcttctaaaaataaaggaagacaa
cagtttaaagcgcaagcaaagcaaaagcgtagaaaaaacattcgtaaggagaattcggat
gccaaaaggaacagataa
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