Granulicatella elegans: LK443_05605
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Entry
LK443_05605 CDS
T09296
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
geg
Granulicatella elegans
Pathway
geg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
geg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LK443_05605
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
geg03019
]
LK443_05605
03009 Ribosome biogenesis [BR:
geg03009
]
LK443_05605
Enzymes [BR:
geg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LK443_05605
Messenger RNA biogenesis [BR:
geg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LK443_05605
Ribosome biogenesis [BR:
geg03009
]
Prokaryotic type
rRNA helicases
LK443_05605
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
Helicase_RecD
CMS1
Motif
Other DBs
NCBI-ProteinID:
UEA30779
LinkDB
All DBs
Position
1130673..1132202
Genome browser
AA seq
509 aa
AA seq
DB search
MKFNELGLDSALLESIEKMGFEEATPIQSQTIPLALAGKDVIGQAQTGTGKTASFGLPML
QKINLRNRKVQGLVIAPTRELAIQTQEELYRLGKDKKIHVQAVYGGADIGRQIRQLKDQP
HIVVGTPGRLLDHISRKTLRLDNIETLVLDEADEMLNMGFLEDIESIIKLVPENRQTLLF
SATMPDDIKRIGVQFMKEPEHVRIKSSEMTATLIDQYFVKCKDFEKFDIMTRLLDVQTPE
LTIVFGRTKRRVDELARGLEMRGFRAEGIHGDLSQQKRMSVLRDFKNNHLDILVATDVAA
RGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGQEGMSVTFVTPNEMDYLRVIEDLTRK
RMTALRPPTQMEAIEGQMKSAIEQIDEKMKSVDTRRFKEAISYLLDEYEADELAALLVSG
MIKDPTEIPVKITPERPLPSRKRGNSRGNYSRSDRKDHRGRNGKGSFKRKEDRRGRGLDE
EYTRGYKSKDSRRRNHKKKSDKGFTIRQK
NT seq
1530 nt
NT seq
+upstream
nt +downstream
nt
atgaaatttaatgaattaggcttagattcagccttattagaatctattgaaaaaatgggg
tttgaggaagcaacaccgatccaatcacaaacgattccattagccttagccggcaaagat
gtcattggtcaagcgcaaacaggtacagggaaaacagcttcatttggattaccaatgctt
caaaaaattaatcttcgtaatcgtaaagtacaaggattagtcattgctccaacgcgtgag
ttagcgattcaaacgcaagaagaattatatcgcttaggaaaagataaaaaaattcatgta
caagccgtttatggtggtgcagatatcggtcgccaaattcgtcaattaaaagatcaacca
cacatcgtagtaggaacacctggacgtttattagaccacatttctagaaaaacacttcgt
ttagacaatattgaaacattagtattagatgaagcagatgaaatgttaaatatgggattt
ttagaagatatcgaatcgattattaaattagtcccagaaaaccgccaaacgttattattc
tctgccacaatgccagatgatattaaacgaattggagttcagtttatgaaagaacctgaa
catgttcgtattaaatcaagtgaaatgacagcgacattaattgatcaatattttgtaaaa
tgtaaagattttgaaaaatttgatattatgactcgtttattagatgttcaaacaccagaa
ttaaccattgtgtttggtcgtacaaaacgtcgtgtagatgaactagcacgtggacttgaa
atgcgtggttttcgtgcagaaggaattcatggtgatttaagtcaacaaaaacgtatgagc
gttttacgtgatttcaaaaataatcatttagatattttagtagcaacagacgtagcagca
cgtggattagatatttcgggtgtaactcatgtttataactacgatattccacaagatcca
gaaagttatgttcaccgcattggacgtacaggacgtgcgggacaagaaggaatgtcagtg
acttttgtaacaccaaatgaaatggattatttacgtgtaattgaagatttaactcgtaag
agaatgactgcattacgtccaccaactcaaatggaagcaatagaaggacaaatgaaatct
gccattgagcaaattgatgaaaagatgaagtcagtagacacacgtcgtttcaaagaggct
atttcttatttattagatgaatatgaagcagatgaattagcagcattattagtgagtgga
atgattaaagacccaacagaaattcctgttaaaatcactccagaacgtccgttaccaagc
cgtaaacgtggtaatagccgtggaaattacagtcgtagtgatcgtaaagatcaccgaggc
cgtaatggtaaaggaagcttcaaacgtaaagaagaccgccgtggtcgtggtttagatgag
gaatatactcgtggatataagagtaaagattctcgtcgtagaaatcataaaaagaaatct
gacaaaggatttaccatccgtcaaaaataa
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