Paragemmobacter aquarius: HYN69_03000
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Entry
HYN69_03000 CDS
T05407
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
geh
Paragemmobacter aquarius
Pathway
geh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
geh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HYN69_03000
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
geh03019
]
HYN69_03000
03400 DNA repair and recombination proteins [BR:
geh03400
]
HYN69_03000
Enzymes [BR:
geh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HYN69_03000
Messenger RNA biogenesis [BR:
geh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HYN69_03000
DNA repair and recombination proteins [BR:
geh03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
HYN69_03000
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
DEAD
AAA_19
Helicase_C
UvrD_C
UvrD_C_2
ResIII
Viral_helicase1
Motif
Other DBs
NCBI-ProteinID:
AWB47607
UniProt:
A0A2S0UIE4
LinkDB
All DBs
Position
618012..623147
Genome browser
AA seq
1711 aa
AA seq
DB search
MPFLEFLRPRPADKLPLLERCLSVDLEVDPKKAAIFDLAAVRFGSGPAVAARGRLQKSLD
DLEAALKATSHIIGHNILRHDIEHLLAARPRLRDKMSAPIDTLWLNPPAFPRNPYHHLVK
HHHDGRLQAGHVNDPELDARLVFQVLENQIEALRNQAPEMLLAWHFLVTRSDRSDGFDAV
FQHVRNANAPDRGTALAAIRKILVGQACGAQVDPALDALKDAQMAWPMAYALAWISVSGG
ESVMPPWVRFSFPRAALIVRQLRDTNCGKPTCSWCATMNDPKGALAKWFGFPAFRPEPTD
ADGRPLQEVIVERSMAHDHVLGILPTGTGKSVCYQVPALSLYDKTGALTVVISPLVALMA
DQVQGMERAGISSAVTINGMLSMPERQEALDRVRLGQAAILLISPEQLRSVSVRSVLNQR
EVGIWVLDEAHCVSKWGHDFRPDYRYIGRFIREFSGDAPPAPILCLTATAKPEVVRDITD
HFRERLGIELGLFDGGATRTNLSFSVLPTGKESKLGDILTAIQDHLPEGRSGAVVYCATR
PETERVAEFLKAQGLAAAHFHARLTADDKRSVQEAFRVGDLRVIAATNAFGMGIDKPDIR
LVVHADIPGSLENYLQEAGRAGRDRQPATCVLLYHTDDVERQFTLAARSRLERHEIGAIL
KALRRIDEQGRNGGKVVATTGEIVREEKDRDFIRDSATDDTRVKTAVSWLEEATLVSREE
NRVQVFPSSLMVRTLAEAAERLGKAQITETRRKQLLDIVRHLMNTPADQGISTDELTGIA
GLTHRGLAKAMADLETLSLAKNDIAITVQVHVGIENASRQRLAAARALEGALIGTMREMA
PDADAGGGCLLDLTVASQKMREIGNSGAGPHILERLLRSIERDGRDEDGGQGNIRLRKLS
SKTLELTLQRSWRVVDQTASLRWTAAERLLEFMIAKVPSGTRGKDIQVEMTLGDLLAQLN
GDAVIRASGIKDMTKLMERALLWLHEQQVLTLGKGLTVFRSAMTIHLNPERTPFAAKDFL
PLQEHYREQTVQTHVMAAYAEKGLERIDEAQRLSEDYFTMDQERFLRRWMPGQGIEIRRQ
TTGRAWKQIVEDLGNPTQQEIVADDREETNVLVLAGPGSGKTRVLVHRMAYLLRVRREDP
KGILVLTYNRHAAAEIKARLRGLVGEDAAWVTVSTCHALAMRLVGASFVGGATETRDFDA
ILQDAVRLLTGEGLSRAEAEAQREALIQGYRWILVDEYQDIGPDEYALIAAVAGRSLEDP
DQRLSLFAVGDDDQNIYAFSGASISFIRQFEQDCRAKPKFLTENYRSTRYIIDAANQVIE
PAQGRMKAGHPITVDKVRTLHPGGGVMATYDPVSRGRVQFLDVVGDDVVQGVAAVDELVR
LSRLDPDFSWSRTAIISRDWKRLAPVRAYAEKLGLPVEMANEKLPSIWRMREMQRLVAGL
RERPAAMLTIQNILDVLNRQRPTRWVELIAEGVADLARELGTKAIPVPDAVEWLAEWAQD
VRGSQRGLLLLTAHRSKGLEFDHVVILNGGWQALSQGEDGEAPRRLFYVAMTRARRSLSV
VTSGAHAFVRADSESELLRKVEAPRPVDLPEPDQYQLPDMSAVDLSYAGRLAETSQTLAA
VAAAEVDDPVTLDLHEGKWMIIDTRGRVLGRMAGNWNPPEGTHLVAGKVGAIVRWRKTDN
EEAFQVYIKRGEWETVLPELVFRKDPRAFKR
NT seq
5136 nt
NT seq
+upstream
nt +downstream
nt
atgccttttcttgaatttttgcgcccaaggcccgccgacaagctgcctctgctagagcgg
tgtttgtcggtcgatctggaagtcgatcccaagaaggcagcgatcttcgacctcgccgcc
gtgcgctttggttccggtcctgctgtggcggcgagaggacggttgcaaaagtcactggat
gatcttgaagcagcccttaaggcgacaagtcacattatcggtcacaacatcctgcgtcat
gacatcgagcatcttctggccgcgcgtccgaggcttcgcgacaagatgagcgcgccgatc
gatacgctttggctgaacccgccggcctttccgcgcaacccttaccatcacttggtgaag
catcaccacgacgggcgcttgcaggcggggcatgtgaacgatcctgagctagatgcccgg
ctggtgtttcaggttctggaaaaccagatcgaagccttgagaaaccaagcgcccgagatg
cttctggcgtggcattttcttgtgacgcgatcggatcggtcggacgggttcgacgctgtt
tttcagcatgtccgcaacgcgaacgcacccgaccgagggacggcactcgccgcgatccgc
aaaatcttggtcggccaggcgtgtggtgcgcaagtcgaccccgctctggatgccctgaaa
gacgcgcagatggcttggccgatggcctatgcgctagcgtggatatcggtgtccggaggc
gagtccgtcatgccgccttgggtccggttttcgtttccgcgggccgcgttgatcgttcgt
caactgcgcgacaccaactgtggcaagccgacttgctcctggtgcgcaacgatgaacgat
ccgaagggcgcgctggcgaaatggttcgggtttccggctttccgtcctgagcctaccgat
gctgacggacgaccgttgcaggaggtcatcgtcgagagaagcatggcccatgaccatgtc
ctcggcatcctgcccaccggcaccggcaagtcggtctgttatcaagtcccggccctcagc
ctctatgacaaaacaggcgcattgaccgtcgtgatctcgcctctcgtggcattgatggcc
gaccaagtgcaggggatggaacgcgctggtatttcgtcagctgtaacgatcaacggtatg
ctgtcgatgccagagcggcaggaagcgctggatcgcgtcaggctgggtcaggctgctatc
ctgctgatttcgccagaacaacttcggtcggtctcggtgcgttcggtcctgaatcaacgc
gaggtcggaatttgggtgttggacgaggcgcattgcgtctcgaaatgggggcacgatttc
cggcctgactatcgctacatcgggcgtttcatccgagaattctcgggtgatgcaccgcca
gccccgatcctctgcctgacggctacggccaagcccgaggtcgtgcgcgatatcaccgac
catttccgcgagcggcttggaatcgagcttggactgttcgacgggggggcgacacggacg
aacctgtccttttcggtgctgccgacggggaaggagagcaagcttggcgatatcctgacg
gccatacaggatcatcttcccgaggggcgttctggcgcggttgtctattgcgcgacccgc
cctgagaccgagcgcgtggcagaatttcttaaggcacagggtctggccgctgcccatttt
cacgcgcggttgacggccgatgacaaacggtccgtgcaggaagcctttcgtgtgggtgac
ctgcgggtgatcgcggcgacgaatgccttcggcatggggatcgacaagcccgacatccgg
cttgttgttcatgccgacatccccggctcactcgagaactatcttcaggaggcaggtcgc
gccggacgtgaccgacagcctgccacgtgcgtgctgttgtatcataccgacgatgttgaa
cggcaattcaccctggccgcacgttcgcgtctggaaaggcacgagatcggcgccatcctc
aaggctctgcgtcggatcgacgagcagggacggaacggcggcaaggttgtggcgaccacc
ggagaaatcgtgcgcgaggagaaggatcgcgactttatccgcgacagcgcgaccgacgac
acgcgggtcaaaacggccgtttcgtggctggaggaggcaacccttgtctcacgtgaagag
aaccgtgtgcaggtgttcccttcatcgctcatggtgcgcacgttggccgaagcggcagag
cggctcggaaaagcgcagatcacagaaacacggcgcaagcagcttttggatatcgtccgc
cacctgatgaacacgcccgccgatcagggtatttcaaccgatgagttgaccggcatcgcg
ggccttacacatcgcggactcgccaaggccatggctgaccttgagacgctcagtctggcg
aagaacgacatcgcgattacggttcaagtccacgtcgggatagagaacgcctcgcgccag
cggcttgcggcagcacgggcgctggaaggcgcgctgatcggcacgatgcgggaaatggca
cctgatgctgatgcgggtggggggtgcctcttggacctcacggttgccagccagaagatg
cgcgagatcgggaattccggtgcaggccctcatatccttgaacgcctgttgcgcagtatc
gagcgggacgggcgcgacgaagatggcgggcagggcaatatcaggctgagaaagctgtcg
tccaagacgctcgaacttacgcttcagcggtcatggcgggtggtggaccagacggcttcc
ctgcgctggaccgcagccgaacggttgctggaattcatgatcgccaaggtgcccagcggg
accaggggcaaggatattcaggtcgaaatgacgctcggtgaccttttggcccagctgaac
ggtgatgctgtcataagggcatcgggcataaaggacatgaccaagctgatggaacgtgcg
ctgctttggctgcacgaacagcaggtgctgacgctgggcaagggactgacggtctttcgc
tcggccatgacgatccatctgaacccagagcggacgccatttgcggccaaggacttcctg
cccctgcaagagcattaccgcgagcagaccgtgcagacccatgtcatggctgcctatgcc
gaaaaggggctggaacggatcgacgaggcgcagcggctgtcagaagattacttcaccatg
gatcaagagcgcttcctgcgccgctggatgcccgggcagggtattgagattcgccgccaa
accaccggacgcgcgtggaagcagatcgtcgaagacctcggcaatccgactcagcaagag
atcgtggccgatgatcgcgaggagaccaacgtcctcgtgctggccggtcccggatcaggc
aagacacgggtgctcgttcaccgcatggcctatcttctgcgcgtccggcgcgaagacccc
aagggcatactcgtcctgacctacaaccgccatgccgcggccgagatcaaggctcgcctt
cgcggacttgtgggagaggatgccgcttgggtcactgtctcgacttgccacgcgcttgcc
atgcggctggtaggtgcgagctttgttggtggagcgaccgagactcgcgatttcgacgcc
atcctgcaggacgccgtgcgcctgctcacgggcgaaggattaagccgcgccgaggccgag
gcgcagcgcgaggcgttgatccaaggataccgctggattcttgtcgatgagtatcaggac
atcggacccgacgaatatgcgctgattgctgccgttgcggggcgctcgctggaagacccc
gatcagcgcctcagcctctttgccgtgggggatgacgaccagaacatctacgccttcagc
ggggcgtcgatttcgttcatccgccagtttgaacaggattgccgagccaagccgaagttc
ctgaccgagaattaccgatcgacccgctacatcatcgacgctgcaaaccaggtcatcgaa
cctgcccaagggcgcatgaaagcgggccacccgatcacggtagacaaggttcgcaccctc
catcccggcggcggcgtcatggcgacctacgaccccgtcagccgtggccgcgtgcaattc
ctcgacgttgtcggcgacgacgtcgttcaaggcgttgctgcggtggatgaactggtccgg
ctttcccgtctcgacccggatttctcgtggtcgcgcacggcgatcatctctcgcgactgg
aagcgactggcgcccgtgcgggcctatgccgagaagctgggtctgcctgtcgagatggca
aatgaaaagctgccgagcatatggcgcatgcgcgagatgcaaaggttggttgctggcctg
cgggagcggccagcggcaatgctgacgatccaaaacatccttgatgtcctcaaccggcaa
cgcccgacacgctgggtcgagttgattgccgagggtgtcgcggatctcgcccgcgaactc
ggcaccaaggcgatccctgttccagatgccgtggagtggcttgccgaatgggcacaagat
gtcaggggatctcagcgtgggcttctgcttttgaccgcgcatcggtccaaggggctggag
ttcgatcatgttgtaatcctgaacggcggctggcaggcgctttcgcaaggtgaagacggc
gaagctccacggcgcctgttttacgtcgccatgactcgggcgcggcgaagcctttccgtc
gtgacgagcggggcacatgccttcgtccgcgccgacagtgaaagcgagctgttgcgcaag
gtcgaggccccgcgacccgtcgacctgcccgaacctgaccaatatcaattgccagacatg
agcgcggtcgatctttcctatgccggtcgtcttgccgagacgagccagacgcttgccgcc
gttgctgctgccgaggtcgatgaccccgtgacgctggacctacacgagggaaaatggatg
atcattgacacccgaggacgagtgctcgggcgtatggcggggaactggaatccgcccgaa
gggacgcaccttgttgcaggcaaagtcggggccattgtccgctggcgcaaaaccgacaac
gaggaggctttccaagtctacataaagcgtggggagtgggagacggttcttccggagctg
gtgtttcgaaaggaccctcgcgccttcaaaaggtga
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integrated database retrieval system
