Paragemmobacter aquarius: HYN69_04340
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Entry
HYN69_04340 CDS
T05407
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
geh
Paragemmobacter aquarius
Pathway
geh03420
Nucleotide excision repair
geh03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
geh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HYN69_04340
03430 Mismatch repair
HYN69_04340
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
geh03400
]
HYN69_04340
Enzymes [BR:
geh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HYN69_04340
DNA repair and recombination proteins [BR:
geh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HYN69_04340
MMR (mismatch excision repair)
Other MMR factors
HYN69_04340
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_30
PcrA_UvrD_tudor
AAA_11
Motif
Other DBs
NCBI-ProteinID:
AWB47841
UniProt:
A0A2S0UJ90
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All DBs
Position
890097..892535
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AA seq
812 aa
AA seq
DB search
MSQFDEHDAFEAAAVPPTIPLSQRAVAARPAPYMDDLNPAQRAAVEALDGPVLMLAGAGT
GKTKALTSRIVHLMRMGRARPNEILAVTFTNKAAREMKERVGRLLGEAAEGMPWMGTFHS
LSVKILRRHAELAGLKSNFTILDTDDQIRLLKQLIVAANIDEKRWPARMLAGMIDGWKNR
ALTPDRVPAAEAGGYNNRGTEIYEQYQERLRTLNAVDFGDLLLHVVTIFQKHGDVLAQYQ
RWLKYILVDEYQDTNICQYLWLRLLAQGHRNICCVGDDDQSIYGWRGAEVGNILRFEKDF
PGAVVIKLEQNYRSTPHILAAASGVIAGNAGRLGKTLWTEAEVGEKVRLIGHWDGDEEAR
WTGEEIEALQRGTRGMRKYGPEDMAILVRASHQMRAFEDRFLTIGMPYRVIGGPRFYERQ
EIRDAMAYFRLAVSPEDDLAFERVVNLPKRGLGDKAQADIQRMARLSGMSLLEGARELVA
SGGIGGKGAGQLRGFVEGIDRWHGLTLQTVPVIGDDDVIEGVAAFGTAPKTMDHVRLAET
ILEESGYTAMWQNDKTPEAPGRLENLKELVKALEQFDNLQGFLEHVSLIMENETEEALEK
VSIMTLHAAKGLEFPVVFLPGWEDGLFPSQRSMDESGLKGLEEERRLAYVGITRAEEVCT
VSFASNRRVYGQWQSQLPSRFIDELPPAHVEVLTPPGLYGGGYGAAATFGASAFDERVGK
ADVYNSPGWRRMQDRSATRPVAQPREARGVVIDATAVSAFAEGDRVFHQKFGYGLVIGIE
GDKLEVDFSKAGVKRVVAGFVVDADAVDDVPF
NT seq
2439 nt
NT seq
+upstream
nt +downstream
nt
atgagccaattcgacgaacatgacgctttcgaggctgcggccgttcccccgacgatcccc
ctgtcgcaacgggcggtggcggcgcggcctgcgccctatatggacgacctgaaccccgcg
cagcgggcggcggtcgaggcgttggacggacccgtgctgatgctggccggtgcggggacg
ggcaagaccaaggcgctgacgtcacgcatcgtgcatctgatgcggatggggcgggcgcgg
ccgaacgagatcttggcggtgacttttaccaacaaggccgcccgcgagatgaaggagcgg
gtggggcgcttgctgggcgaagcggccgaggggatgccgtggatgggcacctttcattcg
ctttccgtcaagatattgcgtcggcatgcggaactggcggggctgaagtcgaactttacc
attctggatacggatgaccagatccggttgctaaagcagttgatcgtggcagccaacatc
gacgagaagcgatggcccgcgcggatgctggccggaatgatcgacggctggaagaaccgc
gcgctgacgcccgaccgcgtgcctgccgccgaggcggggggctacaacaaccgcgggacc
gagatttacgagcagtatcaagagcggcttcgcacgctgaacgcggtcgatttcggcgat
ctgctgctgcatgtggtgacgatcttccagaagcacggcgatgttctggcgcagtatcag
cgctggctgaaatacattctggtggacgagtaccaagacaccaatatctgccagtatctg
tggctgcgcctgctggcgcaggggcaccgcaacatctgctgcgtgggcgatgacgaccag
tcgatctatggctggcggggggccgaggtcggcaacatcctgcggttcgagaaggatttt
cccggcgcggtggtgatcaagctggagcagaattaccgcagcacgccgcatattctggcc
gccgcttcgggggtgatcgcggggaacgcggggcgcttgggcaagacgctgtggaccgag
gccgaggtgggcgagaaggtgcggctgatcggccattgggacggcgacgaggaagcgcgc
tggaccggtgaggagatcgaggccttgcagcgcggcacgcgggggatgcggaaatacggg
ccggaggatatggccatactggtgcgggccagccaccagatgcgggcgttcgaggaccgg
tttctgacgatcgggatgccgtatcgcgtgatcggggggcctcggttctatgagcggcag
gaaatccgcgatgcgatggcctatttccggctggcggtttcgcccgaggatgatctggcc
tttgaacgggtggtgaacctgcccaagcgcgggcttggcgacaaagcgcaggccgatatc
cagcgcatggcgcggctgtcggggatgagcttgcttgagggcgcgcgcgagttggtcgca
tcgggcgggatcggcggcaagggcgcggggcagttgcgcggctttgtcgaggggatcgac
cgttggcacgggctgacgttgcagacggtgccggtgattggcgatgatgatgtgatcgaa
ggtgtcgctgcctttggcacggcacccaagaccatggaccatgtgcggctggccgagacg
atcctggaagaatcgggctacacggccatgtggcagaacgacaagacgcccgaggctccg
gggcgcctggagaacctgaaggaactggtcaaggcgctggaacagttcgacaatttgcag
gggtttctggaacacgtctcgctgatcatggagaacgagacggaagaggcgctggaaaag
gtgtcgatcatgacgctgcatgcggccaagggactggagtttccggtggtgttcctgccg
ggctgggaggacgggctgttcccgagccagcgcagcatggacgagagcgggctgaagggg
ctggaggaggagcggcggctggcctatgtggggatcacgcgggccgaggaggtctgcacg
gtgtcttttgcgtcgaaccggcgggtttacgggcagtggcaaagccaattgcccagtcgc
ttcatcgatgagctgccgcccgcgcatgtcgaggtgctgacgccgccggggttgtatggc
ggcggatacggggctgcggcgacgtttggcgcttcggctttcgacgagagggtgggcaag
gcggatgtctacaactcgcccggctggcggcggatgcaggaccgttcggcgacccgcccc
gtggcccagccgcgcgaggcgcggggggtggtgatcgacgcgaccgctgtttcggccttt
gccgaaggggaccgcgttttccaccagaagttcggctatggtctggtgatcgggatcgag
ggcgacaagctggaggtcgatttcagcaaggcgggcgtcaagcgcgtggtggcggggttc
gtggtggacgccgacgctgtggatgacgtgccgttctga
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