Paragemmobacter aquarius: HYN69_08120
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Entry
HYN69_08120 CDS
T05407
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
geh
Paragemmobacter aquarius
Pathway
geh03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
geh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HYN69_08120 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
geh03400
]
HYN69_08120 (mfd)
Enzymes [BR:
geh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HYN69_08120 (mfd)
DNA repair and recombination proteins [BR:
geh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
HYN69_08120 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
Helicase_C
UvrB_inter
CarD_TRCF_RID
ResIII
MFD_D3
Cas3-like_C_2
AAA_16
SecA_DEAD
RecG_dom3_C
AAA_30
UB2H
Motif
Other DBs
NCBI-ProteinID:
AWB48481
UniProt:
A0A2S0UL10
LinkDB
All DBs
Position
1690282..1693731
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AA seq
1149 aa
AA seq
DB search
MQTGPKILLGGAPEGYDARLLARELAKGQPVIHIARDDKRAEAMRAALAVMAPGAVVLDL
PAWDCLPYDRVSPNPEISARRMATLAALADGIKGAFVLLTTLSAATQRLPARSVIRDAAF
SARVGDRVDEARLKNFLVRMGFSPSSTVAEPGDYALRGGIIDIWPPGSRSPIRLDFFGDV
LDGARRFDPETQRTTEKLTQIDFAPMSEVILDEAAITRFRQTYRIEFGAAGTDDPLYEAV
SAGRKHQGMEHWLPFFHERLETLFDYLPDATVMLDDQLTPARLSRWEGIEDQYDARKDAL
SAKGRLDSVYKPCAPALLYLDDTAWEAAIAPHRAIQLSPNPQAPGPNVLDAQGRMGRSFA
PERQQENISLFGALADHLKTLLQDGNVIIASWSEGARERLEGLLQDQGVSGSKRAKDFRD
VAEGKGNLYLMVWALESGFTAPGLAVISEQDVLGDRLVGKPKRKRKAENFLRDADTLTPG
DLVVHVEHGVGRYLGLETITALGAPHACVALEYAEGAKLYLPVENIELLSRYGHEEGLLD
RLGGGAWQAKKAKLKERIREIADRLMRIAAERALRHAPILEAPHNLWEAFAARFPYTETD
DQLSAIADVVADLESGRPMDRLVVGDVGFGKTEVAMRAAFVAALAGMQVAVICPTTLLAR
QHYRSFAERFRGFPITVRPLSRFVSQKEANATRDGLADGTVDICVGTHALLAKGIRFKSL
GLLIIDEEQHFGVTHKERLKEMRSEIHVLTLTATPIPRTLQLSLAGVRDLSIIATPPVDR
LAIRTYISEFDTITLREALLRERYRGGQSFIVVPRISDLPEIEEFLHTHVPECSYVIAHG
QLAAGDLDERMNEFYDGKYDVLLSTTIVESGLDIPTANTMIIHRADMFGLSQLYQIRGRV
GRSKTRAYCFLTTKPRAPLTPQAMKRLRLLGGLDSLGAGFNLASHDLDLRGAGNLLGEEQ
SGHIKEVGYELYQQMLEDTIAKIKSGELSGLSPIDDQWAPQINLGVPVLIPEDYVTDLDV
RLGLYRRLSSLQTKVELEGFAAELIDRFGALPKEVNTLLLIVRIKSMCKRAGISRLDAGP
KGATVQFHNDKFANPAGLVDFIKADPAAKVNGNKIVMLRDWKTEGDRIKGAFAIARDLAE
KVVRPKAKA
NT seq
3450 nt
NT seq
+upstream
nt +downstream
nt
atgcagacaggtccgaaaattctcctcggtggtgcgcccgaaggctatgacgcgcggctt
ctggcccgcgaacttgccaagggccagccggtcatccacatcgcccgcgacgacaaaagg
gctgaagcgatgcgcgccgcccttgccgtcatggcgccgggtgcggtggtgcttgacctg
cccgcgtgggattgcctgccctacgaccgcgtctcgcccaaccccgagatttcggcacgc
cgcatggccacgcttgcagcactcgccgatggcatcaagggcgcgttcgtcctgctcacc
acgctttccgccgcgacccagcgcctgcccgcgcgcagcgtgatccgcgacgccgccttt
tccgcccgcgtgggcgacagggtggatgaggcgcggctcaagaacttcctcgtccgcatg
ggcttttcgccctcgtccaccgtggccgaaccgggcgattacgcgctgcgcggcggcatc
atcgacatctggccgccggggtcacgctcgcccatccggctcgatttcttcggggacgtg
ctcgacggtgcgcgccgtttcgaccccgaaacccagcgcaccaccgaaaagctgacccag
atcgatttcgccccgatgtccgaggtcattctcgacgaggccgcgatcacccgtttccgc
cagacctatcgcatcgaattcggcgcggcaggcaccgacgacccgctttacgaagcggtc
agcgcaggccgcaagcatcaggggatggagcattggctgcccttcttccacgaacggctg
gaaaccctgttcgactatctgcccgatgccaccgtcatgctcgacgaccagttgaccccc
gcgcgcctgtcgcggtgggagggtatcgaggaccaatatgacgcccgcaaggatgcgctt
tccgccaaggggcggctcgattccgtctacaagccctgcgcccccgcgttgctttatctc
gacgataccgcatgggaggccgcaatcgcgccccatcgcgcgatccagctatccccaaac
ccgcaagcccccggcccgaacgtactcgacgcacagggccggatggggcgcagtttcgca
cccgagcgccagcaggaaaacatcagcctttttggagccttggccgatcatcttaagaca
ttgcttcaagacggcaacgtcatcatcgcctcatggtccgaaggtgcccgcgaacggctt
gaggggctgctgcaagaccaaggcgtaagcggctcgaaacgtgccaaggatttccgcgac
gtggccgagggtaagggaaacctgtacctgatggtctgggcgctcgaatccggctttacc
gcccccggccttgcggtgatttccgaacaggatgtgctgggcgaccgtctggtcggcaaa
cccaaacgcaagcgcaaggccgagaatttcctgcgcgacgccgacacgctgacgcccggc
gatctggtggtccatgtcgaacacggggtggggcgctaccttggcttggaaaccatcacc
gcccttggtgcgccgcacgcctgcgtggcgctggaatatgccgaaggcgcaaagctgtat
ctgccggtcgagaacatcgaactgctgtcgcgctacgggcacgaagaaggcctgctcgac
cgtctgggcggcggcgcttggcaggcgaaaaaggccaagctgaaagagcgtatccgcgaa
atcgccgaccgcctgatgcggatcgctgccgaacgcgccctgcgccacgcccccattctg
gaagccccccataacctgtgggaggcctttgccgcccgcttcccctataccgaaaccgac
gaccagctttccgccatcgccgatgtggtggccgatctcgaatccggccgcccgatggac
cgtctggtcgtgggcgatgtgggcttcggcaagaccgaggttgcgatgcgcgcggctttc
gtcgcagccctcgccggcatgcaggtggcggtgatctgcccgacaacgcttctggcccgc
cagcactaccgcagctttgccgaacgcttccgtggctttcccatcaccgtccgcccgctg
tcgcgcttcgtgtcgcaaaaagaagccaacgccacccgcgatggccttgccgatggcacg
gtcgacatttgcgtcggcacccatgcgctgctggccaagggcatccgcttcaaatcgctg
ggccttttgatcatcgacgaagaacagcatttcggcgtgacccataaagaacgcctgaaa
gagatgcgctcggaaatccatgtcctgacgctgaccgcaacgcccatcccgcgcaccttg
caactgtcgcttgcaggcgtgcgcgacctgtctatcatcgccacgccccccgtcgaccgt
ctggcaatccgcacctacatttccgaattcgacaccatcaccctgcgcgaggcgctcttg
cgcgaacgctaccgtggcggccaatctttcatcgtcgtcccgcgcatttccgacctgcct
gagatcgaggagttcctgcacacccatgtgccggaatgcagctacgtcatcgcccacggc
caactcgccgcaggcgatctcgacgagcggatgaacgaattctacgacggcaaatatgac
gtgctgctgtccaccaccatcgtggaaagcggtctcgacatccccaccgccaacaccatg
atcatccaccgcgccgacatgttcggcctgtcccagctctaccagatcagggggcgcgtg
gggcggtcaaagacccgcgcctattgcttcctcaccaccaaaccccgcgcgccgctgacg
ccccaagccatgaagcgcctgcgcctgctcggcgggctggacagccttggcgccggtttc
aacctcgcctcgcacgacctcgacctgcgcggcgcgggcaaccttctgggcgaggaacag
tccggccatatcaaggaagtgggatacgaactttaccagcagatgctggaagacacgatc
gccaagatcaaatcgggcgaactctctggcctgtcccccatcgacgaccaatgggcgccg
cagatcaacctcggcgtgcctgtgctgatccccgaagattacgtgaccgacctcgacgtg
cggcttggcctttatcgccgcctgtcgtccttgcaaaccaaggtcgaactcgaaggcttc
gccgccgaattgatcgaccgtttcggcgcattgccgaaagaggtgaacacgctgctcttg
atcgtccgcatcaagtcgatgtgcaaacgcgcaggcatcagccggcttgatgcagggcca
aagggcgcgaccgtgcagttccacaacgacaaattcgccaaccccgcaggtctggtcgat
ttcatcaaggccgatccggcggcaaaggtgaacggcaacaagatcgtcatgctgcgcgac
tggaaaaccgaaggcgaccgcatcaagggcgccttcgccatcgcccgcgatctggcggaa
aaggtggtcaggccaaaggctaaggcctga
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