Paragemmobacter aquarius: HYN69_11605
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Entry
HYN69_11605 CDS
T05407
Name
(GenBank) ribonuclease E/G
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
geh
Paragemmobacter aquarius
Pathway
geh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
geh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HYN69_11605
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
geh03019
]
HYN69_11605
03009 Ribosome biogenesis [BR:
geh03009
]
HYN69_11605
Enzymes [BR:
geh01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
HYN69_11605
Messenger RNA biogenesis [BR:
geh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HYN69_11605
Ribosome biogenesis [BR:
geh03009
]
Prokaryotic type
rRNA processing factors
HYN69_11605
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
AWB49059
UniProt:
A0A2S0UML0
LinkDB
All DBs
Position
complement(2403808..2406615)
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AA seq
935 aa
AA seq
DB search
MTKKMLIDATHAEETRVVVVDGNKVEEFDFETVNKRQLAGNIYLAKVTRVEPSLQAAFVD
YGGNRHGFLAFAEIHPDYYQIPVADRKALLEEERALNRAEDEEDNRRSRPRSNGNGNGNS
RPRPEGQRRDAVRSSEIGGMDVVDLGDETGADALVTPVEAEAAVVETHEAQDHSHDHDHA
NDHGHDHDHSQGDENGNGDTTPAPYRAMDHASDTDDEIESIAEEDVAEEISAPRKPRARR
YKIQEVVKVRQIMLVQVVKEERGNKGAALTTYLSLAGRYCVLMPNTARGGGISRKITQAT
DRKKLKEIAQEIEVPEGAGLIIRTAGAKRTKPEIKRDYEYLMRLWEQIRELTLKSIAPAA
IYEEGNLIKRSIRDLYSREIDEILVEGEAGYRTAKDFMRMIMPSHARLVKRYDEAMPLFA
RFQVESYLGGMFNPVVQLKSGGYIVIGITEALVAIDVNSGRATKEGSIEDTALKTNLEAA
EEVARQLRLRDLAGLIVIDFIDMEERRNNAAVEKKLKDKLKTDRARIQVGRISGFGLMEM
SRQRLRPGMLESTTQPCSHCHGTGLIRSDDSLGLQVLRALEEEGTRKRSKEVLLKAPIGI
VNFLINGKREHIALIEARYGMAVRIECDPAMVSPDYVIEKFKTATRVVPEQSSVISGHAG
LMGAAVDEYEDEDLPLEDLDEVEEAEVEETEAEAKSEPRAAAAAEGAANGNGKKKRRRRR
RRKGPGNGTGTDAAGAEDGSDGDDEGDDEGDEDQDGEAVAVEAAVVAEPVAEAPKKLTRT
RGGAKAKKAAEPVAEVEAETVAEPVGEAAVETVAEVAKPAKKPSSRSKAAKVEPEAGDAG
EAPVKKPSGRARGKAKEVAAVEAAPVVEAGDAAPVEVAAPVAEARPAEQVRAEPVRAEVM
QPAPAEASAPESAPESAPEEDSGKPRKKGWWSLGR
NT seq
2808 nt
NT seq
+upstream
nt +downstream
nt
atgaccaagaaaatgcttatcgatgccacccatgcggaagagacccgcgttgtggtggtg
gacggaaacaaggtcgaagaattcgactttgagacggtcaacaagcggcagctcgccgga
aacatctatctcgccaaggtgacgcgcgtcgagccgtcgttgcaggcggctttcgtggat
tacggcggaaaccggcacgggtttctggcctttgccgagatccatccggattattaccag
atccccgtcgccgaccgcaaagcgctgcttgaggaagagcgggcgctgaaccgggccgag
gacgaggaggacaatcgtcgcagccggccgcgcagcaacggcaacggcaacggcaattcg
cggccccgccctgaagggcagcgccgcgatgcggtgagatcgtcggagatcggcgggatg
gatgtcgtcgatctgggcgacgagacgggcgcggatgcgctggtcacgccggtcgaggcc
gaagctgcggtggtcgagacgcatgaggcgcaggatcactcgcatgatcacgaccacgcc
aacgatcatgggcatgaccacgaccattcgcagggcgacgagaacggcaatggcgatacc
acgcccgcgccttatcgggcgatggaccatgccagcgataccgacgacgagatcgagtcg
atcgccgaagaggacgtggccgaggagatcagcgcgccaagaaagccccgtgcgcggcgt
tacaagatacaggaagtggtcaaggtccggcagatcatgctggtgcaggtggtcaaggag
gagcgcggcaacaagggcgctgcgctgacgacctatctgtcgctggccggtcgttattgc
gtgctgatgccgaacacggcgcggggcggcggcatcagccgcaagatcacccaagcgacc
gaccgcaagaagctgaaagagatcgcgcaggagatcgaggtgccggaaggtgccggtctg
atcatccgcacggcgggggccaagcgcaccaagcccgagatcaagcgcgattacgaatat
ctgatgcgcctgtgggagcagatccgcgagttgacgctgaaatcgatcgctccggcggcg
atttacgaagagggcaacctgatcaagcggtcgatccgtgacctttacagccgcgagatc
gacgagatcctggtcgagggcgaagcgggttatcgcaccgccaaggatttcatgcggatg
atcatgccgagccatgcgcggctggtgaaacgctatgacgaggcgatgcctttgttcgcg
cgctttcaggtcgaaagctatctgggcggcatgttcaaccctgtcgtgcagttgaaatcg
ggcggttacatcgtcatcgggatcaccgaggcgctggttgccatcgatgtcaactcgggt
cgggcgacgaaggaggggtccatcgaggacaccgccttgaagaccaacctcgaagcggcg
gaagaagtggcgcggcagttgcggctgcgcgaccttgccggtctgatcgtcatcgacttc
atcgacatggaagagcggcgtaacaatgccgcggtcgagaagaagctgaaggacaagctg
aaaaccgaccgtgcgcggattcaggtgggccggatttccggtttcggcctgatggagatg
agccgccagcggctgcgtccggggatgctggaaagcaccacccagccgtgcagccattgc
catggcacggggctgatccggtcggacgattcgcttggtttgcaggttctgcgggcgctg
gaagaagagggcacgcgcaagcggtccaaagaggtgctgctgaaagcgccgatcgggatc
gtcaacttcctgatcaacggcaagcgcgagcatatcgcgctgatcgaggcgcgctatggc
atggcggtccggatcgagtgtgatccggcgatggtcagccccgattacgtgatcgagaag
ttcaagaccgcgactcgggttgtgcccgagcaatcgagcgtgatttcgggccatgccggt
ctgatgggcgcggctgtcgacgaatacgaggacgaggacctgccgctggaagacctcgac
gaggtcgaggaggccgaggtcgaggagacggaagccgaggccaaatccgagccgcgtgcg
gcggcggcggccgagggtgccgccaatggcaacggcaagaagaagcgccggcgtcggcgt
cggcggaagggtccgggcaatggcacgggcacggatgctgcgggagccgaggacggttct
gacggcgacgacgaaggcgatgacgagggcgacgaggatcaggacggcgaagctgttgct
gtcgaagctgccgtggttgccgagcctgtcgccgaagcgccgaagaagctgacgcggacc
cgtggcggggccaaggccaaaaaggctgccgagcctgttgccgaggtggaagccgaaacc
gtcgcagagcctgtcggcgaggcggctgtcgaaactgttgccgaggtggcgaagccagcg
aagaagccgtcgagccggtcgaaggctgcaaaggtcgagcccgaggctggcgatgcaggt
gaagcgccggtgaagaagccgtcgggccgggcgcgtggcaaggcgaaggaagttgctgcg
gtcgaggctgcaccagtggtcgaggccggggatgcggcgcctgtcgaggttgcggcacct
gtggccgaggcacgtccggcggagcaagttcgggcggagccggttcgggcggaggtgatg
cagcctgcgcctgccgaggccagtgcgcccgagagtgctcccgagagtgctcccgaggaa
gacagcggcaagccgcgcaagaagggttggtggtcgctgggccgctga
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