Geitlerinema sp. PCC 7407: GEI7407_1178
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Entry
GEI7407_1178 CDS
T02366
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
gei
Geitlerinema sp. PCC 7407
Pathway
gei03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gei00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GEI7407_1178
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gei03019
]
GEI7407_1178
03400 DNA repair and recombination proteins [BR:
gei03400
]
GEI7407_1178
Enzymes [BR:
gei01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
GEI7407_1178
Messenger RNA biogenesis [BR:
gei03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
GEI7407_1178
DNA repair and recombination proteins [BR:
gei03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
GEI7407_1178
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RQC
DEAD
HTH_40
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
HTH_20
T4SS-DNA_transf
Motif
Other DBs
NCBI-ProteinID:
AFY65675
LinkDB
All DBs
Position
1406939..1409164
Genome browser
AA seq
741 aa
AA seq
DB search
MATKLSPYASKFDTLEDALKHFFGYESFRPGQREIVEAALDRRDVMVIMPTGGGKSLCFQ
LPALLNSGVSVVVSPLIALMQDQVASLQKNGVGATFLNSSISGEEVRSRQNEILDGRIKL
LYVAPERLLNEQFLLWLNDVRQQVGLSTFVIDEAHCVSEWGHDFRPEYRQLLQIRQRFPE
VPVMALTATATDRVRQDMGEQLALRQPYVHIASFNRPNLYYEVRPKGKNSYDELLQKIRH
VEGSCIVYCLSRRRVNELTTRLQQEGIEALPYHAGLSDDVRTENQTRFIRDDVRVIVATI
AFGMGINKPDVRLVMHYDLPRNIEAYYQESGRAGRDGETAQCLLFYGPGDIKSLDWIIDQ
KVHPVTGEPLEQEQRIARQQLRQVIDYAESTVCRRTIQLSYFGEEFPGNCQNCDNCLHPK
PLEDWTIEAQKFLSCVARCRERFGVNYIIDVLRGSKNKKVLSNGHQALSTYGIGRDRSVD
AWRSLARTLIHQGLVDETSDGFSVLKLNAASWEVMRKQRTVLVAALPAEPVLEARAEAQI
EAEMLFERLRSLRKQLADEQAIAPYMVFADSSLRLMAQQRPTTLQQFAGISGVGSHKLAL
YGDRFIAEIRDYCEEQGLTVASESRSLASPARSRSRGALSNTHFATLALHQEGASASDIA
QQRGYRLGTIVDHLALLLEAGQRVDIDRLVPPERQNAILEAIAAHGDAALLVLRQHLGEA
YTHDEIRLVRSWWRGDNRQSS
NT seq
2226 nt
NT seq
+upstream
nt +downstream
nt
atggcaaccaagctttccccctacgcttcaaaatttgacaccctagaagacgctctcaag
cacttttttggctacgagtcttttcggccggggcagcgcgaaattgtcgaggcagccctc
gatcgccgcgatgtcatggtcatcatgcccaccggcggcggcaaatccctgtgctttcag
ctgccagccctcctaaattctggggtgagcgtcgtggtgtcgcccctgattgctctgatg
caggaccaggtcgcctccctccagaaaaacggcgtgggagcaacctttctcaacagcagc
atcagcggagaagaggtgcgatcgcgccaaaacgagattctcgatggccggatcaagctg
ctctatgtcgcccccgagcggctgctcaatgaacaatttttgctgtggctcaacgacgtg
cgccagcaggttgggctctccacctttgtgatcgatgaggcccactgcgtttcggagtgg
ggccacgattttcggccagagtaccgccagctgctgcaaattcgccagcgcttcccggag
gtgccggtgatggccctgacggcgacggcgacagaccgggtgcgccaggacatgggggag
cagctggccctgcggcagccctacgtgcacatcgccagcttcaaccggcccaatctgtac
tacgaggtccggccgaagggcaaaaacagctatgacgagctgctgcaaaagattcggcat
gtcgagggatcttgcatcgtctactgccttagtcggcggcgggtcaacgagctgacaacg
cgattgcagcaggagggcatcgaggcgctgccctaccatgcggggctttccgatgacgtg
cgaaccgagaaccagacgcgcttcattcgggatgatgtgcgggtgatcgtggcgacgatc
gcctttgggatgggcatcaacaagccggatgtgcgcctggtgatgcactacgatctgccg
cgcaacatcgaggcctactaccaggagtcggggcgcgcgggccgggacggggagacggcc
cagtgcctgctgttttacgggccgggggacatcaaaagcctcgactggatcattgaccag
aaggtgcacccggtgacgggggagccgctggagcaggagcagcgcattgcgcggcagcag
ctgcgccaggtaatcgactatgccgagagtacggtgtgccgccgcacgatccagctcagc
tactttggcgaggagtttccgggcaattgccaaaattgcgacaactgcctgcatcccaag
cccctagaagattggaccattgaggcgcagaagtttctctcctgcgtggcccgctgtcgg
gaacgctttggcgtgaactacatcattgatgtgctgcggggctccaaaaacaaaaaggtc
ctgagcaatggccaccaggcgctgtcgacctacggcattgggcgcgatcgcagcgtggat
gcgtggcgatcgctggcccgcaccctgattcatcagggcctggtggacgaaacgagcgat
ggattttcggtcctcaagctgaatgcggcgagctgggaagtgatgcgcaaacagcgcacg
gtgctggtggcggccctgccggccgagccggtgcttgaggcgcgagcagaggcccagatc
gaggcggaaatgctgtttgagcggctgcgatcgctgcgcaagcagctggcggacgagcag
gcgatcgccccctacatggtgtttgcggattcgagcctgcgcctgatggcccagcagcgc
cccacgactttgcagcagtttgccggtatctcgggggtgggcagccacaagctggctctc
tacggcgatcgcttcattgcggagatccgcgactactgcgaggagcagggactgaccgtg
gcttcggagtcgcgctccctagcctcgcccgcacgatcgcgatcgcgcggcgccctgtcc
aacacccactttgcgaccctggccctccaccaggaaggcgcgtcggccagcgacattgcc
cagcagcggggctatcgcctgggcacgatcgtggatcatctggccctgctgctggaggca
gggcagcgggtcgatatcgatcgcctggtgccgccggagcgccaaaacgccattttggag
gcgatcgcagcccacggagacgcggctctgctggtcctgcgtcagcacctgggcgaagcc
tacacccacgatgaaattcgcctcgtgcgatcgtggtggcggggcgacaatcgtcaatcg
tcctaa
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