Geitlerinema sp. PCC 7407: GEI7407_2808
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Entry
GEI7407_2808 CDS
T02366
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
gei
Geitlerinema sp. PCC 7407
Pathway
gei03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gei00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GEI7407_2808
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gei03019
]
GEI7407_2808
03400 DNA repair and recombination proteins [BR:
gei03400
]
GEI7407_2808
Enzymes [BR:
gei01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
GEI7407_2808
Messenger RNA biogenesis [BR:
gei03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
GEI7407_2808
DNA repair and recombination proteins [BR:
gei03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
GEI7407_2808
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
SNF2-rel_dom
Motif
Other DBs
NCBI-ProteinID:
AFY67281
UniProt:
K9SBH8
LinkDB
All DBs
Position
complement(3445050..3447584)
Genome browser
AA seq
844 aa
AA seq
DB search
MSFQTIQDALNIFVAMEGTDDVAEACQRRLLKALQASSSHTPAPGDLTALVRHVLRREAE
QQGGNSPILKVPRNAPFPKSRQIWELSSMDILDEQPEYFLLSARPWIPDWLPEAEEQSPE
VPLFQEVVRRNYQPEGGDPFLAELGFNTYQSTGQREAIRSILTAPAQSTLVINLPTGSGK
SLCAHLPAWLKSKPVGVTVVVVPTVALAIDQERAFQEKTGINFATAYYSDASVDGQERRE
EIRDRIRQGTQPIVFTSPEGLIESLAFSVYEAVRQGFLRYLVIDEAHIVEQWGDEFRPEF
QELAGLRKDLLRVAQQQGVAVFPTLLLTATVTESCLDTLETLFGQPGPFQLVSSVQLRPE
PTFWFAYCVNEAERKQRLIEALHHLPRPLILYGSKVADVDQWHRELKAAGFNRCAKMTGK
SNQQERLQLLQDWREQRIDIVVATSAFGLGVDLPDVRAVVHLCVPETIDRFYQEVGRGGR
DGKATLSLTLYTRSDFDVASALSEITYITSDRGRMRWQAMFDKQITLPDGRFQVPIDVRP
SYNLDLDSTSVRNQDWNIRTLTLMSRANLIEIDAEAPPQRALFDSDEAFSDAIARHRNLR
TIQIRNDYHLVPETWQERVEPARNQRQQWASRSLNLMREALQSKRCISEIFAEAYKIPAR
STPPRRRVHVERSCGGCPFCRQQKIVPFSGVMPVPLPVWQEARFQLGEVLLELLAGESIL
AIFYEATESRQGARDRNKLLQRLIREGILNVVAPPSMHTVFSKLLVFLFEDYQPLQMPKV
PTLIYHLQGKALPSHYYQPFKSGIPLIMFLPEDIPDPNAKHRKLQDIWTGRSFRLNLLCG
ELGL
NT seq
2535 nt
NT seq
+upstream
nt +downstream
nt
atgagtttccaaaccattcaagatgctctgaatatctttgttgcaatggaagggactgat
gatgtcgctgaagcctgtcagcgtcgcctgctaaaagcattgcaagcatcaagttcccat
acaccagcaccaggagatctaaccgcgctcgtccgtcacgttttgaggcgagaagctgag
caacaaggtgggaactctccgatcctaaaggttcctcgcaatgcaccctttcctaaatct
cggcagatttgggaattgagtagtatggacattctagatgaacaaccagagtattttctc
ttgagtgcccgcccctggatacctgattggttgccagaagccgaagagcaatctcctgaa
gtgcctctatttcaggaagtggtgcgccgaaattatcaacctgaagggggcgaccccttt
ctagctgaattaggtttcaatacttatcagagtacaggacaacgagaggcaattcgctca
attctcaccgcgccagcacaatcaactctggtgattaatctgcccactggctctggcaag
agtctctgtgcccatctaccagcatggttaaagtcaaaaccagttggtgttacagtggtc
gtcgtcccaaccgtagcgttagccattgatcaagagcgagcctttcaagaaaaaactggg
attaattttgcaaccgcctattacagtgatgcttctgttgatggacaagagcgccgcgag
gaaatccgcgatcgcatccgacaagggactcaaccgattgtatttacatccccagagggc
ttaattgagtctttagcattcagtgtttatgaagcagtacggcaggggtttcttcgatat
ttggtcattgacgaagctcacattgtagagcaatggggagatgagttccgtcctgaattt
caggaattggcaggcttgcgaaaagacttattgcgagttgcccaacagcaaggagtagca
gtatttccaacgctgctccttactgcaacagtcactgaatcctgtctagacaccctggag
acgctcttcggtcaaccaggaccattccagttagtttcatcagtccaactgcgcccggaa
ccaaccttttggtttgcctattgcgtcaatgaggcagaaaggaaacaacgcttaattgaa
gcactgcatcatcttcctcgccccctgattctttacggtagcaaggtcgcggatgtagac
cagtggcatcgagagttaaaagcagcaggcttcaatcgctgcgccaagatgactggtaaa
tccaaccaacaagagcgtttacagctcttacaggactggcgagagcaacgaattgatatt
gttgttgctacctctgcctttgggttaggagtcgatttgccagacgttcgtgcagttgtg
catttgtgtgtaccagaaacaatcgaccgcttctatcaagaggtcggacgcggtggtcga
gatggaaaagcaaccctctccttaacgctttatactcggtcagattttgacgttgcttct
gctttaagtgaaataacctacattacaagcgatcgcggcagaatgcgctggcaagcgatg
ttcgataagcagataactttaccagatgggcggtttcaagttccaatcgatgtccggcct
tcctacaaccttgacctcgactcaaccagtgtaaggaaccaagactggaatatccgaaca
cttaccttgatgagccgggctaatttgattgagattgatgcagaagcgcctccgcaacgg
gcacttttcgattctgatgaggcttttagcgatgcgatcgcacgacatcggaatttacga
acgattcaaattcgcaatgactatcatctggtaccagaaacctggcaagagcgagtagaa
cctgctcgtaatcagcgtcagcagtgggctagtcggagtctgaatttgatgcgagaggcg
ctgcaatccaagcgttgcatttctgagatttttgcagaggcatacaaaattcccgctcgt
tccaccccaccacgtcgtcgtgttcatgttgaacgatcctgtggtggttgcccgttttgt
cgccaacagaagattgttcctttttcaggagtgatgccagttccccttccagtatggcaa
gaagcgcgatttcagctgggtgaagtgcttttggagcttttagcaggagagtcaatactc
gctattttttatgaggcaacagagagcagacagggagcgcgcgatcgcaacaaacttctc
caacggttaattcgtgaaggtattctcaacgtcgtggctcctccttcaatgcatacagtt
tttagcaaattattggtttttctgtttgaagattatcagccattgcaaatgccgaaagtt
cccacattgatttatcacctccagggcaaggctttaccttctcactattaccagccattt
aaatcaggtattcctctcattatgttcctgcctgaagatattcctgaccccaatgctaaa
caccgaaagttgcaggatatttggactggacgtagttttcgcctaaatttgctttgtgga
gaattagggttatga
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