Geitlerinema sp. PCC 7407: GEI7407_3135
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Entry
GEI7407_3135 CDS
T02366
Name
(GenBank) protein of unknown function UPF0027
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
gei
Geitlerinema sp. PCC 7407
Brite
KEGG Orthology (KO) [BR:
gei00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
gei03016
]
GEI7407_3135
Enzymes [BR:
gei01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
GEI7407_3135
Transfer RNA biogenesis [BR:
gei03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
GEI7407_3135
Prokaryotic type
tRNA splicing ligases
GEI7407_3135
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
DEK_C
Motif
Other DBs
NCBI-ProteinID:
AFY67603
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All DBs
Position
complement(3851948..3853132)
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AA seq
394 aa
AA seq
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MPHEPLNITTPAPVLSWASHGLGHAETQMAKNVASLPFVFKHVALMPDVHLGKGALVGSV
IATQDAIIPAAVGVDIGCGMCALQTPFRADQLESKTLKKIRRELEAAIPVGFSENKDIEK
EVYNWRGWSQFKDLHGGVQHLETKALRQMGSLGGGNHFIELCLDTEDQVWLMLHSGSRNI
GNMLAQNHIRTARDLAKLAELRLPDPDLAYFVAGTPEFAAYWRDLQWAQDYARYNRDVMM
RRFQRIVETHLAGGKATKPRLMVNCHHNYAERETHYDQEVYVTRKGAVRARSEDYGIIPG
SMGAKSFIVRGKGNPESYCSCSHGAGRLMSRSKAKQQFTVDDLVRQTEGIECRKDSGVID
EIPAAYKPIEEVMAQQADLVEVVATLKQVLCVKG
NT seq
1185 nt
NT seq
+upstream
nt +downstream
nt
atgccccacgaacccctcaacatcaccacgccagcgcccgtcttgtcctgggcgagccac
ggactggggcatgcggagacccagatggccaaaaacgtcgcctccctgccctttgtcttc
aagcacgtggccctcatgcccgacgtccacctgggcaaaggggcgctggtcggctccgtg
atcgccacccaagatgccatcattccggcggctgtcggcgttgacatcggctgtggcatg
tgtgcccttcagacgccttttcgggccgaccagctcgaaagcaaaaccctcaagaaaatt
cgccgtgaactggaggccgccattcccgttggctttagcgaaaacaaagacatcgagaaa
gaggtctacaactggcgcggctggtcccagttcaaagatctccatggcggcgtgcagcac
ctggaaaccaaggccctgcgccaaatgggctccctagggggcggcaaccacttcatcgag
ctgtgcctcgacaccgaggaccaggtgtggctgatgctgcactccggctcgcgcaacatc
ggcaatatgctggcccaaaaccacatccgcacggcccgcgacctcgcgaagctggcggag
ctccgcttgcccgatccagacctggcctactttgtggcggggacgccggagtttgcggcc
tactggcgcgacttgcagtgggcccaggactacgcccgctacaaccgggacgtgatgatg
cggcggtttcagcgcatcgtcgagacccacctggcgggcggcaaggcgaccaagccgcgc
ctgatggtgaactgccaccacaactacgcagagcgcgaaacccactacgaccaagaggtc
tacgtcacccgcaaaggagcggtgcgggcgcggtcggaggactacggcatcattcccggc
tcgatgggggccaagtcttttatcgtgcggggcaagggcaaccccgagagctactgctct
tgcagccatggcgctggacgcctgatgtctcgctccaaggcgaagcagcagttcacggtg
gacgacttggtgcgccaaaccgagggcatcgagtgccgcaaggactctggcgtgattgac
gagattccggcagcttacaagcccattgaagaagtgatggctcagcaggcggatttggtc
gaggttgtggcgacgctcaagcaggtgctctgcgtgaagggctag
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