Geitlerinema sp. PCC 7407: GEI7407_3578
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Entry
GEI7407_3578 CDS
T02366
Name
(GenBank) Exoribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
gei
Geitlerinema sp. PCC 7407
Brite
KEGG Orthology (KO) [BR:
gei00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
gei03016
]
GEI7407_3578
Enzymes [BR:
gei01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
GEI7407_3578
Transfer RNA biogenesis [BR:
gei03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
GEI7407_3578
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
HTH_RNase_II
CSD_RNase_II
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
AFY68045
UniProt:
K9SD06
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All DBs
Position
4362854..4364881
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AA seq
675 aa
AA seq
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MQKGTLIEFRLHGDRRLAVAERPEGKKHWIVIDERGQSHTLHPRQVTYEVADQSYKPTEI
PQFLAEVQNYLDPSSLEVAWELLVEDGESTTPALLAQLLFSDQSPAFCYAAHSLLSEDKL
YFKQKGDSYEPRSVTQVAEIKHQVAVEAQRQREWQEFLARLEMALAGESVEWGSGDRPRL
DTLERFATLGETANHRTPALEILAALKRPETPQGAFQLLVDLGLWSVHENLFLRRSQLPV
EFSTKVIDVAHGRLQSPPPDAHPDRLDLTHLKVYTIDDESTREIDDGLSLEYLPDGRERL
WIHIADPTRWVEPGDELDLEARRRGTTVYLPTGMIPMFPSDLATGPMSLIQGQICCALSF
GVLLTAEGAVEDYSIHVSRIKPTYRLTYEDVDEMLQLGITAEPELNGIAEWARRRDRWRH
AQGAISIRMPESSIKVQDDEVVVNVLEDSQARQLVAEMMILAGEVAAHYGQTHGLYMPFR
NQTQPELPPEEELMQLPAGPVRACAIRRCMPRSEMSLTPARHASLGLDTYTQVTSPIRRY
TDLLAHFQIKAHLRGEPTPFSSDVMQEVLASVSTTAYEAVLVERQTNRYWGLEFLRRHTG
EVWQAMMLRWLREHENLGLILLEELGLELAWRPSRSMELGERIQVRVTYVDPRQDIVQFE
EMASYETMAQTATSL
NT seq
2028 nt
NT seq
+upstream
nt +downstream
nt
gtgcaaaagggaacgctgatcgaatttcgcctgcatggagaccgtcgactggctgttgcg
gagcgtccagagggcaagaagcactggatcgtcattgacgaacggggtcagtcccacacg
ctacatcccagacaagtcacctacgaggtcgcggaccaatcctataagccgactgagatt
cctcagtttttggccgaggtgcagaactacctcgacccctcgagtctagaggtggcctgg
gagctgctggtcgaggatggagaaagcacgactccggcgctgctggcgcagctcctgttt
tcggaccagagtccggcgttttgctatgctgcccactccttgctctcggaagataagctt
tatttcaagcaaaagggagacagctacgagccgcgctctgttactcaagtcgctgagatc
aagcatcaggtagccgttgaggctcagcgtcagcgagagtggcaagagtttttggcgagg
cttgaaatggcgctggccggtgagtcagtggagtggggcagtggcgatcgcccgcgtttg
gatacactggagcgttttgctactctgggggaaactgcgaaccatcggaccccggctctc
gaaattttggccgcgctgaagcgccccgaaactcctcaaggcgcttttcaactgctggtc
gatctggggctgtggagcgttcacgagaacctcttcctgcggcgcagtcaacttcccgtt
gagttctctacaaaggtcattgacgtggctcatggtcgtcttcagtctccgccaccggat
gcccatcccgatcgcctggacctgacgcatctcaaggtctacacgatcgatgatgagagc
acgcgcgaaattgatgatggcctgagcctagagtatttgccggatgggcgggagcggttg
tggatccacatcgcagacccgacgcgctgggtcgagccgggggatgagctggatctagag
gcgcgccgtcgcgggacgacggtgtacctgccgacggggatgattcccatgttcccgtcg
gatttggcgacggggccgatgagcttgattcagggccagatctgctgcgcgctaagcttc
ggggtactgctgacagcagagggagcggtcgaagattacagcatccatgtcagccgcatc
aagccgacctaccgcctgacctatgaggatgtggacgagatgctgcagcttggcatcacg
gcggagccagagctcaatgggattgctgagtgggcgcgtcgccgcgatcgctggcgtcat
gcccagggcgccatcagcattcggatgcccgagtcttcgatcaaggtccaagacgatgag
gtggtggtcaatgtcctggaggattcccaggcgcgccagcttgtcgctgagatgatgatt
ttggccggagaggtggccgctcactacggccaaacccacggcttgtatatgcccttccgc
aaccagactcagccggaactgccgcccgaggaagagctgatgcagctaccggcgggaccg
gtacgggcctgcgcgattcgccggtgcatgccccgcagcgaaatgagtctgacgccggct
cgccacgccagtttgggcctcgacacttatacccaggtgacgtctcccattcggcgctac
accgatttgctggctcactttcagatcaaggctcacctgcggggcgagccaactcctttt
tcgtcggacgtgatgcaggaagtgctggcgagcgtgagcacgacggcctatgaggcggtg
ctggtggagcgtcagaccaatcgctattggggcctggagtttttgcggcggcacacgggt
gaggtgtggcaggcgatgatgctgcgctggctgcgggagcacgaaaacttgggactgatt
ttgctggaggagctggggctagagctggcctggcgaccgtcgcgatcgatggagctggga
gagcgaatccaggtacgggtcacctatgtcgatccgcgccaggacattgtgcagtttgaa
gagatggcgtcctacgagacgatggcccagacggcaacgtcgctttag
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