Geobacillus sp. JS12: A0V43_09200
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Entry
A0V43_09200 CDS
T04412
Name
(GenBank) ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
gej
Geobacillus sp. JS12
Pathway
gej03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gej00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
A0V43_09200
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gej03019
]
A0V43_09200
03400 DNA repair and recombination proteins [BR:
gej03400
]
A0V43_09200
Enzymes [BR:
gej01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
A0V43_09200
Messenger RNA biogenesis [BR:
gej03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
A0V43_09200
DNA repair and recombination proteins [BR:
gej03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
A0V43_09200
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
ResIII
VHL_C
Motif
Other DBs
NCBI-ProteinID:
AMQ21036
UniProt:
A0A142D1Y4
LinkDB
All DBs
Position
complement(1894728..1896251)
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AA seq
507 aa
AA seq
DB search
MDELTKTLHERFGHVSFRPGQRDVIEDVLSGRDVLAMLPTGSGKSLCYQLPAYFLPGSVL
IVSPLVSLMEDQVEQLRRRGEKRVVAFHSLLDAEEKWHALTSLPDFRFIYASPEMLQSET
FLAALRRARVSLFVVDEAHCISQWGYDFRPDFLKLGAVRHALGSPSCLALTATATPEVQE
DIIRTLGMERTRRHIYSVDRPNIALAVEHCLSVEDKAARLAECAKRLRGPGIVYFSSRQW
AEEMARRLAQNGAGRVAYYHAGMDGEQRLLVQQQFLYDELDIVCCTSAFGMGVDKGNVRF
VLHFHMPAQLEAYVQEIGRAGRDGAPSLAVLFYADGDRAIAQAVAEAELPDSAALREWCR
RLPEDDVGGGWRAMVDAGGFTDIQKRLLAYFLEWGQTAAPEQLTAAAKERLYERMAAAIE
ARRRWKRKKLREMEEWVHASSCRRVAIVRAFGEELSDKPDACCDNCGLETDRFMTDGRRP
EAAPVRPWREELWHMFFGGRRRDEAAK
NT seq
1524 nt
NT seq
+upstream
nt +downstream
nt
ttggatgaattaacgaaaacattgcatgagcggttcgggcacgtgtcgtttcggcccgga
cagcgcgatgtgatcgaagacgtgctcagcgggcgcgatgtgctggcgatgctgccgact
ggaagcggcaaatcgctttgctatcagctgccggcgtatttcctcccggggagcgtgctc
attgtctcgccgctcgtctccttaatggaagatcaagtcgagcagctgcgccggcgcggt
gaaaagcgcgttgtcgcgttccatagtttgcttgatgcggaagaaaaatggcacgccctc
acctcgcttccagattttcgctttatttatgcctcaccggaaatgctgcaatctgaaacg
tttttggcggcgctccggcgcgctcgtgtttcgttgtttgtcgtcgatgaggcgcattgc
atttcacagtggggttatgattttcgcccggactttttgaagctcggagcggtccgccat
gcgctcggttcgccgtcgtgtctggcgctgacggcgacggctacgccggaagtgcaggag
gacatcatccgcacgctcgggatggagcggacgcgccgccatatttattccgtcgaccgc
ccgaacatcgccttggcggtggaacattgcttatcggttgaggacaaagctgcgcgcttg
gccgaatgcgcgaaacggctccgaggaccggggatcgtgtacttttcaagccggcagtgg
gctgaagaaatggcgcgccggctggcgcaaaacggggcggggcgggtcgcctattaccac
gccggcatggatggggaacaacggctgcttgtgcagcagcagtttttatatgacgagctc
gacatcgtttgttgcacaagcgcgttcggcatgggggtggacaaaggaaacgtccgtttt
gtgcttcactttcatatgccggcccagcttgaggcgtatgtgcaggaaatcgggcgcgcc
gggcgtgacggggcgccaagccttgcggtattgttttacgcggacggcgaccgggcgatc
gcccaggcggtcgccgaagcggagcttcccgactcggctgcgctccgcgagtggtgccgg
cggctgccggaagacgacgtcggcggtggatggcgcgctatggttgatgccggcggattt
acggacatacaaaaacggctgttggcgtactttttagaatggggacaaacagcggcgccc
gaacagctgacggccgcggcgaaggagcggctgtatgaacggatggccgctgccatcgag
gcgcggcggcgttggaagcggaaaaaattgcgcgaaatggaggaatgggtgcacgcctct
tcatgccggcgcgtggcgattgtccgcgcgttcggggaggagctatcggacaaaccggat
gcttgctgcgacaactgcggcctggagacggaccgttttatgacggacggccgccgtccc
gaggcggcgcccgtccggccttggcgcgaggagctatggcatatgtttttcggcgggagg
cggcgcgatgaggcggcaaagtga
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