Geobacillus sp. JS12: A0V43_15450
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Entry
A0V43_15450 CDS
T04412
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
gej
Geobacillus sp. JS12
Pathway
gej03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
gej00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
A0V43_15450
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gej03400
]
A0V43_15450
Enzymes [BR:
gej01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
A0V43_15450
DNA repair and recombination proteins [BR:
gej03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
A0V43_15450
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
CarD_TRCF_RID
Helicase_C
ResIII
MFD_D3
Cas3-like_C_2
UB2H
RecG_dom3_C
IstB_IS21
Motif
Other DBs
NCBI-ProteinID:
AMQ22032
UniProt:
A0A142D4T0
LinkDB
All DBs
Position
3151880..3155413
Genome browser
AA seq
1177 aa
AA seq
DB search
MLSLHRYLAENQDVRTIIEGLHVRLKEQLVAGLSGSARSVFISTLYKETGRPLLVVSHNL
FQAQKMYDDLVSLLGPEDVFLYSVNDVIAAEMAVASPELKAQRLEIMNHWAQGGKGVVVC
PVAGLRRLLPPPSLWKQYLFTFSVGQEFDVERCKQKFVQMGYKRVGTVSAPGEFSVRGGI
IDIYPLTAELPYRIELFDTEIESIRTFTPDDQRSQGQIERIMIGPADEIILDGETRRRGI
ERIEAGLASSLETMKDEAAKQRMYEHIHAELEQLREGQEIEQQYKYMSLFYEKVASLLDY
LPEDGVLLMDEMSRLQEAAERLDREEAEWYTSLLDGGKMIHGVPLSHSFSELLQKHRFQR
VYLSLFLRHVPYAHPQNVVNITCKQMQNFHGQMALLQSEVERWTKANYAVVFLAPNADRV
KKLQSLLQDYEIDALPLARDAALLHGKCQLLEGDLNTGFELPLQKIAVITEEELFKKRVK
RPVRRQKLSNAERIKSYAELQVGDYVVHVNHGIGKYLGIETLEINGVHKDYIHIQYQGGD
TLYVPVDQIDQVQKYVGSEGKEPKIYKLGGSEWKKVKKKVESSVQDIAEDLIKLYAEREA
SKGYAFSPDTEMQREFEAAFPYQETEDQLRSIEEIKRDMESDKPMDRLLCGDVGYGKTEV
ALRAAFKAIMDGKQVAFLVPTTILAQQHYETVRERFQGFPIKVGLLNRFRTKKQQAETIK
GLKDGTIDMVIGTHRLLSKDVKFKDLGLLIIDEEQRFGVAHKEKIKQLKANIDVLTLTAT
PIPRTLHMSMIGVRDLSIIETPPENRFPVQTYVMEYTPELVKEAIERELARDGQVFFLYN
HIEDIDLKAEEIAQLVPEARVTYVHGRMSETELESTILAFLEGQYDVLVTTTIIETGIDI
PNVNTLIVYDADRMGLSQLYQLRGRVGRSNRVAYAYFTYRKDKVLNEAAEKRLQAIKEFT
ELGSGFKIAMRDLSIRGAGNILGAEQHGFIDSVGFDLYSQMLKEAIEKRRGIKREDEQPD
VVIDVEVDAYIPSTYIADELQKIEMYKRFKAVETLEDVEALREEMVDRFGDYPDEVAYLF
QIAELKVLAKQLGVESMKQHKQQIDILFTEPASKTVEIQRLSDIGRRHGRLFGFGMDGEK
LKIVLYIKEMKPHEWLMILEETLRRLSGVEKEKSVTA
NT seq
3534 nt
NT seq
+upstream
nt +downstream
nt
gtgctttcgttgcatcgctatttagctgaaaaccaagatgtccgtacgatcattgaaggg
ctccatgtccgtttgaaggaacagcttgtcgccgggctgtccggatcggcccggtctgtt
tttatttccacgctttacaaggagacaggccggccgctgttagtcgtgtctcacaatttg
tttcaggcgcaaaaaatgtatgacgatctcgtttcattgctcggaccggaagacgtattc
ctttactcggtgaacgacgtgatcgccgctgagatggcggtcgccagcccggagctgaag
gcacagcgcttagagattatgaaccattgggcgcaaggcggaaaaggagtcgtcgtctgc
ccggtcgccggcttgcggcgtttgttgccgccgccgtcgctttggaagcagtatttgttc
accttctccgttggacaagagttcgatgtagaacgttgtaaacagaagtttgtgcaaatg
gggtacaaacgggtcggcaccgtttccgcccccggagagttcagcgtccgcggcggcatc
atcgacatttatccattgaccgctgagcttccgtaccgcatcgagctgtttgatacggaa
atcgaatcgattcggacgttcactcctgacgaccaacgttcgcaagggcaaatcgagcgc
atcatgatcgggccggccgatgaaatcattctcgatggcgagacgcggcgccgaggaatc
gagcggattgaagcggggcttgcgtcgagtttggagacgatgaaagatgaggccgccaaa
cagcggatgtatgaacatattcacgctgaacttgagcaattgcgcgaggggcaggaaatc
gagcaacaatataaatatatgtcccttttttatgaaaaggttgcgagtttgctagattac
ctgccagaagacggcgtgctgctcatggatgaaatgagccggctgcaagaggcggcggaa
cggttggaccgcgaagaggcggaatggtatacgagtttgcttgacggcgggaaaatgatt
catggcgtgccgctttcgcattcgttttctgaattattgcaaaaacatcgattccagcgg
gtatacttatcgttgtttttgcgccatgttccgtatgcccacccacaaaacgtcgtcaat
attacgtgcaaacagatgcaaaacttccatgggcaaatggcgcttcttcaatccgaagtc
gagcgatggacaaaggcaaactatgcggttgtgtttttggcgccaaatgccgaccgggtg
aaaaagctgcaatcattgcttcaagattatgagattgacgcgctgccgctcgcgcgcgat
gcggctttgctgcatggcaaatgccagctccttgaaggagatttaaataccgggtttgaa
ttgccgttgcaaaaaattgccgtcatcacagaagaagagctgttcaaaaaacgggtcaaa
cgcccggtgcgccggcaaaagctgtccaacgccgagcggatcaaaagctacgccgaattg
caagtcggcgactacgtcgtccatgtcaaccatggcatcgggaaatatttaggcatcgag
acgttagaaatcaacggggtgcataaagactatattcatatccagtaccaaggcggcgat
acgctgtatgttccggtcgaccaaatcgatcaagtgcaaaaatacgtcggctcggaaggg
aaagaaccaaaaatttacaaacttggcggttcggaatggaaaaaggtcaaaaagaaagtg
gaatcatccgtccaggatattgctgaagatttaatcaagctgtacgccgagcgtgaggca
agcaaaggatatgcgttttcgccggacaccgagatgcagcgcgaatttgaagcggcgttt
ccgtatcaagagacggaagatcagcttcggtcgattgaggaaattaagcgtgatatggag
agcgacaaaccgatggaccgcctcctttgcggcgatgtcggctacgggaagacggaagtg
gcgttgcgggcggcgtttaaagccattatggacggcaaacaagtggcctttcttgtgccg
acgacgatcctagcccaacagcattacgaaacggtgcgcgaacggtttcaagggtttccg
atcaaggttggtctgttaaaccgatttcgcacgaaaaaacagcaagccgagacaatcaaa
gggttgaaggacggcacgatcgatatggtcatcggcacgcatcggctgctgtcgaaagac
gtgaagtttaaagatttaggcttgctcattatcgacgaggagcaacggtttggcgtggcg
cataaagaaaaaatcaagcagctgaaggcgaacatcgacgtgctcaccttaacggcgacg
ccgattccgcgtacgttgcatatgtcgatgatcggcgtgcgcgatttgtcgatcatcgag
acgccgcctgaaaaccgattcccggtgcaaacgtatgtcatggaatatacgcccgaactc
gtcaaagaggcgattgaacgtgagctcgcccgcgacgggcaggtgtttttcctttacaac
catattgaagacatcgatttgaaagcggaagaaatcgcacagcttgtcccggaagcgcgc
gtcacttacgtgcatggccgcatgtcggaaacggagctcgaatcgaccattttggcgttt
ttggaagggcaatacgatgtgctggtgacgacgacgatcattgaaacgggcatcgatatt
ccgaatgtcaacacgctcatcgtctatgacgccgaccggatgggattgtcgcagctgtac
cagctgcgcgggcgcgtcggccgctccaaccgcgtcgcttatgcgtatttcacctatcgg
aaagataaagtgctcaatgaagcggcagaaaagcggctgcaagccattaaagagtttacc
gagctcggctctggttttaaaattgccatgcgcgatttgtcgatccgcggcgcgggcaac
attctcggcgccgaacagcatggctttatcgactcggtcggattcgatttgtattcgcaa
atgttgaaagaagcgatcgagaaacggcgcggcatcaagcgagaagacgagcagccggat
gtcgtcatcgatgtcgaagtcgacgcctatattccgagcacatacattgcagacgaattg
caaaagatcgagatgtacaagcgatttaaggcagtggagacgctcgaagacgttgaggcg
ctgcgtgaggaaatggtcgaccgcttcggcgattatccagatgaagttgcgtatttgttc
caaattgcggagttgaaggtgttggccaagcagcttggcgtcgaatcgatgaagcaacat
aagcagcaaattgacatcttgtttactgaaccggcatcgaaaacggtggaaatccagcgt
ctatctgacatcggacgccggcatggccgcttattcgggtttggcatggacggagagaag
ctgaaaattgtgctctatatcaaggaaatgaagccgcacgagtggctgatgattttagaa
gagacgctgcggcggctgtctggggtggaaaaagagaagtcggtgacggcataa
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