Gelria sp. Kuro-4: kuro4_02800
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Entry
kuro4_02800 CDS
T07432
Symbol
mfd
Name
(GenBank) transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
gek
Gelria sp. Kuro-4
Pathway
gek03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
gek00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
kuro4_02800 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gek03400
]
kuro4_02800 (mfd)
Enzymes [BR:
gek01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
kuro4_02800 (mfd)
DNA repair and recombination proteins [BR:
gek03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
kuro4_02800 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
DEAD
TRCF
CarD_TRCF_RID
Helicase_C
ResIII
AAA_22
AAA_16
UB2H
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
BCV23507
UniProt:
A0A9C7EQM5
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All DBs
Position
complement(251565..255068)
Genome browser
AA seq
1167 aa
AA seq
DB search
MALWDNAAENSELHELLSNVARGVPEQLVHGVSGAQKAYLAALVLEEIRRPALYITSHLQ
QAETVAEDLAAFLPGSKILVFPPAEVLPYEYYAESPELTAQRLNVLGALVRGEAGAVVAP
LAALTRRLLPPAVFARQGFWLRPGDEVDREKLLEHLVELGYTRVERVENRAEFAARGDIL
DVFPLPAVRPLRVELFDTEIDSLREFDPESQRSLAKLTGAWVGPAREVCLLPAEREHALA
AFAASAGRYQDGLRARGLSAQAERVRQRAAAFLERAREGLPEAAARLLPFAYEEETYLMD
YFSPRTLVFLDEPLELVEEGRSFAQGLAGMQKHLLEEGNLLPEEAQLYAGPDILLARLGR
LQRVGLSLFLRRAPYSNPQAFISIAARGLTPYHQNEGRLAEDLRRWHHDGYAVTLRASNE
NRAGRLKTWLKDNVPGIRAAVAVGPISAGFELPTLKVVEISDAEIFGQARRRERRAPLEE
AAVPSFTDLKVGDLVVHVVHGIGRYQGVKTLESAGSTRDYLVLEYAGHDLLYVPTDQVHL
LQKYIGPEGESPRLSKLGGNEWQRAKSRAKRSVEEMAQELLALYARRKAAPGYAFGPDTV
WQKEFEDAFPYEETPDQLKAIEEVKRDMESPHPMDRLLCGDVGYGKTEVAIRAAFKAVMD
GKQVAVLVPTTILAQQHYNTFRQRLARYPVQIEMLSRFRSALEQREIIKRLKRGAIDIII
GTHRLVSKDVRFADLGLVIIDEEQRFGVRQKERLKELKATVDVLTLTATPIPRTLHLSMV
GLRDMSLIQTPPEDRYPVQTYVVEYSDALVRDAIAREIGRGGQVFYLYNRVEGIEAEARR
VQELVPQARVAVAHGQLSETRLARVVLGFLEREYDVLVCTSIIENGLDMPNVNTLVVRDA
DRLGLAQLYQLRGRVGRSNRVAYAYFTYEPQKLLSPIAQKRLQALREFTELGSGFKLAVR
DLEIRGAGNILGAEQHGHIAAIGFEMYCSLLEEAVRELKGEKRPVEVEPQVDLKVTAYLP
ESYVASARDKMELYKAIAACRSEGDVEEVAADLIDRFGDPPPEVATLLEVARLKVLARGA
QVAGLTQRGDKVVLTLSPGAYLTPEEVISLSRATRRRLVPLPGHERELLLRTEGLQPAEV
PAAVRQALLRLRELVAARQVEYNGTND
NT seq
3504 nt
NT seq
+upstream
nt +downstream
nt
atggccctttgggacaatgcagcagaaaatagcgaactgcacgagcttttaagcaacgtg
gcacgcggcgtgccggaacaactggttcacggtgtgagcggcgcacagaaggcctacctg
gccgccctcgtccttgaggaaatacggcggccggccctctacatcacgagccacctacag
caggccgaaaccgtggccgaggacctggcggcgtttctacccggcagtaagatccttgtc
tttccgccggcggaggtactgccttacgagtactacgccgagagcccggaacttacggct
cagcggctgaacgttttgggggcgctggtgcggggcgaggccggcgccgttgtggcgccg
cttgcggccctgacccggcgtcttttgcccccggcggtctttgcgcggcagggtttctgg
ctgcgccccggagacgaggtggatcgggaaaagctgctggagcacctggtggagctgggc
tacacgcgggtggaacgggtggaaaaccgcgcggagtttgcggcgcgcggcgacatcctc
gacgttttcccgctgcccgcggtccggccgcttagggtggagctttttgataccgaaata
gactccctgcgggagttcgacccggaaagccagcgctccctggccaaactcacaggtgcc
tgggtcgggcctgcgcgggaggtgtgcctgctgccggccgagcgcgagcatgcgctcgcc
gcctttgccgcctcggcagggcgctaccaagacggcctgcgcgcacggggcctcagcgct
caggcggagcgggtgcgccagcgcgcggccgctttcctggaacgagcgagggagggcctg
cccgaggcggcggcgcggctcctccccttcgcctatgaggaagagacctatcttatggac
tacttttccccgcgcaccttggttttcctggacgagcccctcgagctggtggaagagggc
cgcagctttgcccagggtctggccgggatgcaaaagcacctcctggaggagggaaacctg
ctcccggaagaggcacagctttacgccggccctgacatcctccttgcgcgcctcgggcgc
ctgcagcgcgtgggtctcagccttttcctgcgccgggccccgtacagcaatccccaggcc
ttcatctccatcgcggcgcggggcctgacgccctaccaccagaatgaagggcggctggcg
gaagatctcaggcgctggcaccacgacggctatgccgtcacgctccgggccagcaacgag
aaccgggccggccgtctgaagacctggctcaaggacaacgtgccgggcatacgggccgcc
gtggcggtgggcccgatttcggccggctttgaactccccaccttgaaggtggtggagata
agcgacgccgagatcttcggccaggctcgccggcgggaacggcgggcgccgctggaagag
gcggccgtccccagcttcacggaccttaaggtgggggacctggtggtgcacgtggtacac
ggcatcggtcgctaccagggcgtgaagacgctggagagcgccggcagcacccgcgactac
ctggtgctcgagtacgcaggccacgatctgctgtatgtccccaccgaccaggtgcacctt
ttgcagaagtacatcggccccgagggcgagagcccccgcttgagcaagctgggcgggaac
gagtggcaacgggccaagagccgggccaaacgctcggtggaggagatggcccaggagctg
cttgccctttatgcccgccgcaaagcggcccccggctatgccttcggccccgataccgtg
tggcaaaaagagtttgaagatgccttcccctacgaggagaccccggaccagctcaaggcc
atcgaggaagtgaagcgggacatggagagcccgcatcccatggaccgcctgctctgcggc
gacgtgggctacggcaagaccgaggtggccatccgcgctgcctttaaggcggtgatggac
ggcaaacaggtggccgtgctggtccccaccaccatcctggcgcaacagcactacaacacc
ttccggcaacgcctggcccgctatccggtgcagattgagatgctgtcccgcttccgcagc
gcgctggaacagcgtgaaatcatcaagcgcctcaagcgtggggccatcgacatcatcatc
gggacgcaccggctggtctcgaaagacgtgcgcttcgccgatctgggcctggtgatcatc
gacgaggagcagcgtttcggtgtgcgtcagaaagagcgcctcaaagagcttaaggcgacg
gtggacgtgctcacccttaccgctacgcccatcccgcgcacgctgcacctttccatggtg
ggcctccgggatatgagccttatccagaccccgccggaggaccgttacccggtacagacc
tacgtggtggaatacagcgacgcgctggtgcgcgacgccatcgcccgggaaatcggccgc
ggcggccaggtcttctacctttacaaccgggtggagggcatcgaggcggaagcgcgccgg
gtacaggaactggttccccaggcccgggtggccgtggcccacggccagctatcggaaacc
cgcctggcccgggtggtgctgggctttttggagcgcgagtacgatgttctggtttgcacc
agcatcattgaaaacggccttgacatgcccaatgtgaacaccctggtcgtacgcgacgcg
gaccggctgggactggcgcagctttatcagctgcgcggccgggtagggcgctccaaccgt
gtggcctacgcctactttacctacgagccccagaagctcctttcacccatcgcgcaaaaa
cgcctgcaggcgctgcgcgagtttaccgaactcggctccggcttcaagctggcggtgcgg
gacctggagatccgcggcgcgggcaatatcctcggcgccgagcagcatggtcacattgcc
gccatcggcttcgaaatgtattgtagcctcctggaggaggcagtgcgggagctgaaagga
gaaaaacggccggtcgaagtggagccgcaggtggacctgaaggtaaccgcctatctgcct
gagagttacgttgcttcggcccgcgataagatggagctttacaaggccattgccgcctgc
cgcagcgaaggcgatgtcgaggaagtggccgccgacctgatcgaccgcttcggcgacccg
ccgccggaggtagcgacgctccttgaggtcgcgcgccttaaggtgctggcccggggggcc
caagtggcggggctcacccagcgcggggacaaggtggtgctgacgctttccccgggtgct
tacctgacgccggaggaggtaatttctctcagccgcgcgacgcgccggcgcttggtgccc
ctgccgggacacgagcgggaactgctcttgcggaccgagggcctccaaccggcagaggtg
ccggccgccgtccggcaggccctgctgcggctccgggagcttgtcgccgcgcgccaggtc
gagtacaatgggaccaacgactga
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