Geobacillus sp. LC300: IB49_04170
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Entry
IB49_04170 CDS
T04018
Name
(GenBank) DEAD/DEAH box helicase
KO
K18692
ATP-dependent RNA helicase CshB [EC:
5.6.2.7
]
Organism
gel
Geobacillus sp. LC300
Brite
KEGG Orthology (KO) [BR:
gel00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gel03019
]
IB49_04170
03009 Ribosome biogenesis [BR:
gel03009
]
IB49_04170
Enzymes [BR:
gel01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
IB49_04170
Messenger RNA biogenesis [BR:
gel03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
IB49_04170
Ribosome biogenesis [BR:
gel03009
]
Prokaryotic type
rRNA helicases
IB49_04170
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Flavi_DEAD
DUF3391
CMS1
Motif
Other DBs
NCBI-ProteinID:
AKU25783
LinkDB
All DBs
Position
complement(771837..773147)
Genome browser
AA seq
436 aa
AA seq
DB search
MTETQFARFSFQPFVIEAIKALRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLL
PIIEKIDPERAEVQAVITAPTRELATQIYHETLKITKFCPKDHMIIARCFIGGTDKQKAL
EKLTVQPHIVIGTPGRINDFIREQALDVHTARTLVVDEADLMLDMGFLVDVDQIAARMPK
ELQMLVFSATIPEKLKPFLKKYMENPTFVQVKPRQAANENIEHVLIPLRGREKARLLHDV
LVSYNPYLAIVFVNTRKMADEVADLLAEQGLKVGVLHGDLTPRERKKVMNQIRDLEFQYV
VATDLAARGIDIEGVSHVVNYELPDDLQFYIHRAGRTARAGYNGIAATIYEPSDQDAIAR
LEKMGISFVHRDLVRGEWKELPPWNRRSKRAGEKKDELAPVIAKLKKAKKVKPGYKKKLR
AELEKKKKRLGRFKQL
NT seq
1311 nt
NT seq
+upstream
nt +downstream
nt
atgacggagacgcagtttgcccgtttttcgtttcaaccgtttgtcatcgaagccattaag
gcgcttcgtttttataaaccgacggaaattcaagaacgcatcattccgggggcgttgcgc
ggcgaaagcatggtcggccagtcgcaaaccgggacagggaaaacgcatgcctatttgttg
ccgatcatcgaaaagatcgatccggagcgtgcggaagtgcaggctgtcatcacggcgccg
acgcgcgagctggcgacgcaaatttatcatgagacattgaagattacaaaattttgcccg
aaagaccacatgatcatcgcccgctgtttcatcggcgggacggataagcaaaaagcgctc
gagaaattgacggtgcagccgcacatcgtcatcggcacgccggggcgcatcaacgatttc
atccgcgagcaggcgcttgatgtgcatacggcgcgcactcttgttgttgatgaggccgat
ttgatgctggatatgggctttctcgtcgatgtggaccaaatcgccgcccgcatgccgaaa
gagttgcaaatgcttgtgttttcggcgaccattccggaaaagctgaagccgtttttgaaa
aaatatatggaaaatccaacattcgtccaggtcaagccgagacaggcggcaaacgaaaac
atcgagcatgtgctcattccgctgcgtgggcgcgagaaggctaggctgcttcatgatgtg
cttgtcagctacaacccgtatttggccatcgtgttcgtcaacacgagaaagatggcggat
gaagtcgccgaccttcttgcggaacaagggctgaaagtcggcgtgctgcacggcgatttg
acgccgcgcgaacgaaaaaaagtgatgaaccaaatccgcgatctcgagtttcaatacgtg
gtcgccaccgatttggcggcgcgcggcatcgacatcgaaggagtcagccatgttgtcaac
tacgaactgccggatgatttgcagttttacatccaccgcgctggaaggacggcgcgcgcc
ggctacaacggcattgcggcgacgatttacgagccgtccgaccaggatgcgatcgcccgc
ctggagaaaatgggcatttcgttcgtccaccgcgatcttgtgcgcggcgaatggaaagag
ctcccgccatggaaccggcggagcaagcgggcgggcgaaaagaaagacgaactcgcgccg
gtgatcgccaagctgaaaaaggcgaagaaagtgaagccgggctataagaaaaagctgcgc
gccgagctcgaaaagaagaaaaagcggcttggccgtttcaaacaattgtag
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