Geobacillus sp. LC300: IB49_11395
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Entry
IB49_11395 CDS
T04018
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
gel
Geobacillus sp. LC300
Pathway
gel03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gel00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
IB49_11395
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gel03019
]
IB49_11395
03009 Ribosome biogenesis [BR:
gel03009
]
IB49_11395
Enzymes [BR:
gel01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
IB49_11395
Messenger RNA biogenesis [BR:
gel03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
IB49_11395
Ribosome biogenesis [BR:
gel03009
]
Prokaryotic type
rRNA helicases
IB49_11395
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
AAA_19
Helicase_RecD
Motif
Other DBs
NCBI-ProteinID:
AKU26938
LinkDB
All DBs
Position
2137078..2138481
Genome browser
AA seq
467 aa
AA seq
DB search
MTTFQELGLSQEVMKAIERMGFEETTPIQAKTIPLSLQNKDVIGQAQTGTGKTAAFGIPI
VEKVDVKNGAVQALVVAPTRELAIQVSEELYKIGAVKRVRVLPIYGGQDIERQIRALKKH
PHVIVGTPGRILDHINRGTLRLEHVHTVVLDEADEMLNMGFIEDIEAILSHVPTGRQTLL
FSATMPDPIRRIAERFMNEPELVKVKAKEMTVPNIQQYYLEVHEKKKFDILTRLLDIQAP
ELAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLSQAKRLSVLRKFKEGSIEILVATDVA
ARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKMGVAMTFVTPREIGQLHHIERTTK
RKMERMKPPTLDEALEGQQRIAIEKLLNVAETENLSFYKRAAEELLEEHDSVTLVAACLK
MLTREPDTTPVKLTEEPPLAGKREKKRGGRPDGSARGRTKKRRITAH
NT seq
1404 nt
NT seq
+upstream
nt +downstream
nt
ttgacgacattccaagaactaggattaagccaagaagtgatgaaagcgatcgagcggatg
ggatttgaagaaacgaccccgattcaggcaaaaacgattccgctcagcctgcaaaacaaa
gatgtcattggccaagcgcaaaccggaactgggaaaacggcggcgtttggtattccgatt
gtggaaaaagtggacgtaaaaaacggcgccgttcaagcgctcgttgtcgcgccgacgcgg
gagctcgccattcaagtgtcggaagagctgtataaaatcggcgcggtcaagcgggtgcgc
gtcctgccgatttatggagggcaagatattgaacggcaaattcgcgccttgaaaaaacat
ccgcacgtcattgtcggcacgccgggccgcattcttgaccatatcaaccgcggcacgctg
cgtcttgagcacgtgcataccgtcgtgctcgatgaggcggacgagatgctcaacatgggg
tttatcgaggacattgaagcgattttaagccatgtgccgaccggtcggcagacgctcctg
ttttccgcaacgatgccggacccgatccgccgcatcgccgagaggttcatgaatgaaccg
gagctcgtgaaggtcaaggcgaaagagatgaccgtgccgaacattcaacagtactactta
gaagtgcacgagaaaaagaaatttgacattttgacgcggcttctcgatattcaggcgccg
gagcttgcgatcgtgttcggccgcacgaagcggcgcgttgatgagcttgccgaggcgctc
aacttgcgcggttatgcggcggaaggcatccacggcgatttaagccaggcgaagcgcctg
tcggtgttgcgcaagtttaaagaaggatcgatcgaaattttagtcgcaaccgacgttgcc
gcgcgcggattggatatttccggcgtgacgcacgtatataacttcgacatcccgcaggat
ccggaaagctacgtccatcggatcgggcggacaggtcgcgccgggaaaatgggtgtggcg
atgacgtttgtcacgccaagggagatcggccaacttcaccatattgagcggacgacgaag
cggaaaatggagcggatgaagccgccaacgctcgatgaggcgctggaaggccaacagcgc
attgccattgagaagcttctcaatgtggcggaaacggaaaacttgtcgttttacaagcgg
gccgccgaggagctgctggaagagcatgattcggtgacgcttgtcgccgcctgcttgaaa
atgttgacgcgcgagccggatactacgccggtaaaactgaccgaagagccgccattagcg
ggcaagcgggagaaaaaacggggcggccgcccggacggctccgcgcgcggacggacgaaa
aaacggcggattacggcgcattaa
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