Geobacillus sp. LC300: IB49_16285
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Entry
IB49_16285 CDS
T04018
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
gel
Geobacillus sp. LC300
Brite
KEGG Orthology (KO) [BR:
gel00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
gel03032
]
IB49_16285
03400 DNA repair and recombination proteins [BR:
gel03400
]
IB49_16285
Enzymes [BR:
gel01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
IB49_16285
DNA replication proteins [BR:
gel03032
]
Prokaryotic type
DNA Topoisomerases
IB49_16285
DNA repair and recombination proteins [BR:
gel03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
IB49_16285
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_Top1
Toprim
Zn_ribbon_RPB9
Toprim_4
zf_Rg
Auto_anti-p27
Lar_restr_allev
Motif
Other DBs
NCBI-ProteinID:
AKU27691
LinkDB
All DBs
Position
3070131..3072206
Genome browser
AA seq
691 aa
AA seq
DB search
MSDYLVIVESPTKAKTIERYLGKKYTVKASMGHVRDLPKSQMGVDIDRGYALKYITIRGK
GQVIKELKTAAKKAKKVFLAADPDREGEAIAWHLAHMLDLDIHSDCRVVFHEITKDAIQQ
SFQQPRSINMNLVDAQQARRVLDRLVGYNISPLLWKKVKKGLSAGRVQSVALRLIIDREK
EIRQFQPEEYWTIQATFQKGDEAFAASFYGMDGEKRELKTEADVKAVLARLSGTAFTVKT
VTKRERKRSPVPPFTTSSLQQEAARKLNFRTKKTMMIAQQLYEGIDLGSEGTVGLITYMR
TDSTRIAETAQQEAAAYIEAKFGAAYVSQEKRKEKNSANAQDAHEAIRPTSAFRDPENVK
PYLTRDQFRLYKLIWERFIASQMAAAVLDTMSVELENNGVVFRASGSTVKFPGFMKVYIE
GTDDQAEEQDRLLPDLTEGETVKSEAVDPKQHFTQPPPRYTEARLVKTLEELGIGRPSTY
APTLDTIQKRNYVVLENKRFVPTELGEIVVELMLEFFPEIIDVEFTAKMEKELDEIEEGK
VEWIKVVDEFYREFEKRLKVAEKEMREVEIKDEPAGIDCDICGSPMVYKMGRFGKFIACS
NFPECRHTKPIVKQIGVKCPKCHEGEIVERNTKKKRIFYGCSRFPECDFVSWDKPLARPC
PKCGGLLVEKKLKKGVQVQCTACDYEEQPET
NT seq
2076 nt
NT seq
+upstream
nt +downstream
nt
atgtcagactacttggttatcgtcgaatcgccaacgaaagcgaagacgatcgagcggtac
ttaggaaaaaaatatacggtcaaagcttcgatgggacacgttcgcgatttgccaaaaagc
cagatgggcgttgatatagaccgcggctacgcattgaaatatattacgattcgcggcaaa
ggccaggtgattaaggagctgaaaacggcggccaaaaaggcgaaaaaagtgtttcttgcc
gccgacccggatcgggaaggggaagcgatcgcctggcatttggcccacatgctcgattta
gacattcactcagactgccgcgtcgtttttcatgaaattacaaaggatgccattcagcag
tcgttccagcagccgcgctccatcaacatgaatcttgtcgacgcccaacaggcgcggcgc
gtgctcgaccgcctcgtcggctacaacatcagcccgctcttatggaaaaaagtcaaaaaa
gggttgagcgccggccgcgtccaatcggttgcgctgcgcctcatcatcgaccgggaaaaa
gaaattcgccagtttcagccggaagaatattggacgattcaagcgacgtttcaaaaaggg
gatgaggcgtttgcggcttcgttttacgggatggacggcgaaaagcgggaattaaaaacg
gaagcggacgtcaaagcggtgctcgcccgcttgagcgggaccgcgtttacggtgaaaacg
gtgacaaagcgggagcgaaaacgcagcccggtgcccccatttaccacatcgtcactgcag
caggaagcggcgcgcaagctgaatttccgcacgaaaaagacgatgatgatcgcccagcag
ctgtacgaagggatcgacctcggcagcgaaggaacggtcgggctcattacgtacatgcgc
accgattcgacgcgcatcgccgaaacggcgcagcaagaggcggcagcgtacattgaggcc
aaattcggcgcggcgtacgtcagtcaggagaagcggaaagaaaagaacagcgcgaacgcc
caagacgcccacgaggcgattcgcccgacctcggcgtttcgcgatccggagaacgtgaag
ccatatttgacgcgcgaccagtttcggttgtataaactcatttgggaacggtttatcgcc
agccagatggcggcggcggtgctcgacaccatgagcgtcgagctggaaaacaacggcgtc
gtgttccgcgcgagcggctcgacggtgaagtttccggggtttatgaaagtgtatattgaa
gggacggacgatcaagcggaagagcaagaccggcttcttccggacttgacggaaggggag
acggtcaagagcgaggcggtcgacccgaagcagcactttacccagccgccgccgcgctat
acggaagcgcgccttgtcaaaacgttggaggagctcggcatcggccgcccatcgacctac
gccccgacgctcgatacgatccaaaaacgcaactacgtcgtgttggaaaacaaacggttc
gtcccgacggagctcggggaaatcgttgtcgagctgatgctagagtttttcccggaaatc
atcgatgtcgagtttacggcgaaaatggaaaaagagctggatgaaattgaagagggaaaa
gtggaatggatcaaagtcgtcgatgagttttaccgcgagttcgagaaaaggttgaaagtg
gcggaaaaagaaatgcgcgaagtggagattaaagacgagccggccgggatcgactgcgac
atatgcggcagcccgatggtgtacaaaatgggccgcttcggcaagtttatcgcctgctcc
aattttcccgaatgccgccatacgaagccgatcgtcaaacaaatcggcgtcaaatgcccg
aagtgccatgaaggagagattgtcgagcgcaacacgaagaaaaagcggatcttttacggt
tgcagccgctttccggagtgcgattttgtctcctgggataagccgcttgcccgcccatgc
ccgaaatgcggcggcctgcttgtcgagaaaaagttaaaaaaaggcgtgcaagtgcaatgc
acggcctgcgattatgaagaacagccggaaacataa
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