Geobacillus sp. LC300: IB49_16520
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Entry
IB49_16520 CDS
T04018
Symbol
polC
Name
(GenBank) DNA polymerase III PolC
KO
K03763
DNA polymerase III subunit alpha, Gram-positive type [EC:
2.7.7.7
]
Organism
gel
Geobacillus sp. LC300
Pathway
gel03030
DNA replication
gel03430
Mismatch repair
gel03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
gel00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
IB49_16520 (polC)
03430 Mismatch repair
IB49_16520 (polC)
03440 Homologous recombination
IB49_16520 (polC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
gel03032
]
IB49_16520 (polC)
03400 DNA repair and recombination proteins [BR:
gel03400
]
IB49_16520 (polC)
Enzymes [BR:
gel01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
IB49_16520 (polC)
DNA replication proteins [BR:
gel03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
IB49_16520 (polC)
DNA repair and recombination proteins [BR:
gel03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
IB49_16520 (polC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
RNase_T
PHP
DNA_pol3_finger
DNA_pol3_a_NII
DNA_pol3_a_NI
HHH_6
tRNA_anti-codon
HHH_3
DEDDh_C
RNase_H_2
DUF1409
Zn_ribbon_8
Motif
Other DBs
NCBI-ProteinID:
AKU27735
LinkDB
All DBs
Position
3112077..3116381
Genome browser
AA seq
1434 aa
AA seq
DB search
MATKEQKERFFVLLEQLKMTSDEWMPYFRDAFIHKVVIDKEEKSWHFYFQFANVLPAEVY
KSFTDRLAAAFRHIAAIRYTIDVESPRVTEDDVRAYWPLCLAELQEGVSPLVDLLSRQTP
AVKGNKLIVTARHEAEALAVKRRFAQKIAAIYASFGFPPLQLEVDVQPAEQEMEQFLAQK
QQEDEERALAVLTDMAKEEEKAAAASPSGPLVIGYPIRDEEPVRPLETIVEEERRVVVQG
YVFDAEVSELKSGRTLLTMKITDYTNSILVKMFSRDKEDAELMSGVKKGMWVKVRGSVQN
DTFVRDLVIIANDLNEIAANERQDTAPEGEKRVELHLHTPMSQMDAVTSVTKLIEQAKKW
GHPAIAVTDHAVVQSFPEAYSAAKKHGMKVIYGLEAYIVDDGVPIAYNETHRRLSEETYV
VFDVETTGLSAVYNTIIELAAVKIKDGEIIDRFMSFANPGHPLSVTTMELTGITDEMVKD
APQPDEVLARFVDWIGDATLVAHNASFDIGFLNAGLARMGRGKLANPVIDTLELARFLYP
DLKNHRLNTLCKKFDIELTQHHRAIYDAEATGHLLMRLLKEAEERSILFHDELNSRTHSD
ASYRLARPFHATLLAQNDIGLKNLFKLVSLSHIDYFHRVPRIPRSVLVKHREGLLVGSGC
DKGELFDNLIQKAPEEVEDIARFYDFLEVHPPEVYKPLIEMDYVKDEEMIQNIIRSIVAL
GEKLNIPVVATGNVHYLNPEDKIYRKILIHSQGGANPLNRHELPDVYFRTTNEMLDCFSF
LGPEKAKEIVVDNTQKIASLIGEVKPIKDELYTPRIEGADEEIKEMSYRRAKEIYGDPLP
KLVEERLEKELKSIIGHGFAVIYLISHKLVKKSLDDGYLVGSRGSVGSSFVATMTEITEV
NPLPPHYVCPNCKHSEFFNDGSVGSGFDLPDQNCPRCGTKYKKDGHDIPFETFLGFKGDK
VPDIDLNFSGEYQPRAHNYTKVLFGEDNVYRAGTIGTVADKTAYGFVKAYASDHNLELRG
AEIDRLAAGCTGVKRTTGQHPGGIIVVPDYMEIYDFTPIQYPADDTSSEWRTTHFDFHSI
HDNLLKLDILGHDDPTVIRMLQDLSGIDPKTIPTDDPDVMGIFSSTEPLGVTPEQIMCNV
GTIGIPEFGTRFVRQMLEETKPKTFSELVQISGLSHGTDVWLGNAQELIQNGTCTLSEVI
GCRDDIMVYLIYRGLEPSLAFKIMESVRKGKGLTPEFEAEMRKHNVPEWYIDSCKKIKYM
FPKAHAAAYVLMAVRIAYFKVHHPLLYYASYFTVRAEDFDLDAMIKGSAAIRKRIEEINA
KGIQATAKEKSLLTVLEVALEMCERGFSFKNIDLYRSQATEFVIDGNSLIPPFNAIPGLG
TNVAQNIVRAREEGEFLSKEDLQQRGKVSKTLLEYLESRGCLDSLPDHNQLSLF
NT seq
4305 nt
NT seq
+upstream
nt +downstream
nt
atggccacgaaagaacaaaaagagcggtttttcgttttgcttgagcaactgaagatgacg
tcggatgaatggatgccgtatttccgtgatgcgttcattcacaaagtcgtgattgataaa
gaagaaaaaagctggcatttctattttcagttcgccaacgtgctgccggccgaggtgtac
aaatcgtttacggaccgcttggcggctgctttccgccatatcgctgccatccggtatacg
attgatgtcgaatcgccgcgcgtaacggaagacgatgtgcgggcgtactggccgctttgc
ctcgccgagctgcaagaaggcgtctcgccgcttgtcgatttgctgagccggcagacgccg
gcggtgaaagggaacaagctcattgtcaccgcccgccacgaggcggaggcgctggccgtc
aaacggcggtttgcgcaaaaaatcgctgcgatttacgcgtcgttcggttttccgccgctt
cagctggaagtcgacgtgcaaccggctgagcaggaaatggagcagtttttggcgcaaaag
cagcaagaagatgaagagcgggcgttggcggtgctgaccgatatggcaaaagaagaggaa
aaggcagcagccgcttctccatccggaccgctcgtcatcggctacccgatccgcgacgag
gagccagtgcgtccgcttgagacgatcgttgaggaagagcggcgcgttgtggtgcaaggg
tatgtgtttgacgctgaggtgagcgagctcaaaagcggccgcacgctgttgaccatgaaa
atcaccgattacacgaactcgattttagtcaaaatgttctcgcgcgacaaagaggacgcc
gagctcatgagcggcgtcaaaaaaggcatgtgggtgaaagtgcgcggcagcgtgcaaaac
gacacattcgtccgcgatttggtcatcatcgccaacgatttgaacgaaatcgctgcaaac
gaacggcaagatacagcgcccgaaggggaaaagagggtcgagctccatttgcataccccg
atgagccaaatggacgcggttacctcggtgacaaaactcatcgaacaagcgaaaaaatgg
ggtcatccggcgatcgccgtcaccgaccatgccgttgttcagtcgtttccggaggcctac
agcgcggcgaaaaaacacggcatgaaggtcatttacggccttgaggcgtacatcgtcgac
gatggcgtgccgatcgcctacaatgaaacgcaccgccgtctttcggaggagacgtacgtc
gtctttgacgttgaaacgaccgggctgtcggctgtgtacaatacgatcattgagctggcg
gccgtcaaaatcaaagacggcgagatcatcgaccggtttatgtcctttgccaatccggga
catccgctgtccgtgacgacgatggaattgaccggaatcacggacgaaatggtgaaagac
gctccgcagccggatgaggtgctggcccgttttgttgactggattggcgatgcgacgctt
gtggcccataacgccagctttgacatcgggtttttaaacgcaggcctcgcccgcatggga
cgcggcaagctcgccaatccggtcattgacacgcttgaactcgcccgctttttgtatccg
gatttgaaaaaccaccggctgaacacgctttgcaaaaagttcgacattgaactgacccag
caccaccgcgccatctacgacgcggaggcaaccgggcatttgcttatgcggctattgaag
gaagcggaagagcgcagcatactgtttcatgacgaattaaacagccgcacgcacagcgat
gcgtcgtaccgcctggcgcgcccgttccatgcgacgctgttggcgcaaaacgacatcggg
ctgaaaaacttgttcaagctcgtctcgctgtcgcacatcgattattttcaccgcgtgccg
cgcatcccgcgctccgtgctggtcaagcatcgtgaagggctgctcgttggctcgggctgc
gacaaaggcgagctgtttgacaacttgatccaaaaggcgccggaggaagtcgaagacatc
gcccgcttttacgattttcttgaggtgcatccgcccgaggtgtacaagccgctcattgaa
atggattacgtcaaagatgaagagatgatccaaaacatcatccgcagcatcgtcgccctt
ggcgaaaagctcaacattccggtcgtcgccaccggcaacgtccattatttaaatccggag
gacaaaatttaccggaaaattttaatccattcgcaaggcggggcgaacccgctcaaccgg
catgagctgccggatgtgtatttccgcacgacgaacgaaatgctggattgcttctcgttt
ttagggccggaaaaagcgaaagaaatcgtcgtcgacaacacacaaaaaatcgcttcgtta
atcggtgaagtgaagccgatcaaggatgagctgtacacgccgcgcatcgaaggggcggac
gaggaaatcaaggaaatgagctaccggcgggcgaaagaaatttacggagacccactgccg
aaactcgttgaggagcggcttgaaaaagagctgaagagcattatcggccacggatttgcc
gtcatttacttaatttcgcataagctcgtcaaaaagtcgctcgatgacggctaccttgtc
gggtcgcgcggctcggtcggctcatcgtttgtcgcgacgatgacggaaattaccgaggtg
aacccgctgccgccgcattacgtctgcccgaactgcaaacattccgagttttttaatgac
ggttcagtcggctcagggtttgatttgccggatcaaaactgcccgcgatgtggaacgaaa
tacaagaaagacgggcacgacatcccgtttgagacgtttctcggctttaaaggcgacaaa
gtgccggatatcgatttgaacttctccggcgagtaccagccgcgcgcccacaactatacg
aaagtgctgtttggcgaagacaacgtctaccgcgccgggacgatcggcacggtcgccgac
aaaacggcgtacggatttgtcaaagcgtatgcgagcgaccataacttagagctgcgcggc
gcggaaatcgaccggctcgcggccggctgcaccggagtgaagcggacgactgggcagcac
cctggaggcattatcgtcgttcccgattatatggaaatttacgactttacgccgatccaa
tatccagccgatgatacgtcatcggaatggcggacgacccattttgacttccactcgatt
catgacaatttattgaagctcgatattctcgggcacgacgatccgacggtcattcgcatg
ctgcaagatttaagcggcatcgatccgaaaacgatcccgaccgacgacccggacgtgatg
ggcattttcagcagcaccgagccgcttggcgttacgccggagcaaattatgtgcaacgtc
ggcacgatcggcatcccggaattcggcacgcgctttgtccggcaaatgctcgaagaaacg
aagccgaaaacattttccgagctcgtgcaaatttccggtttgtcgcacggcaccgatgta
tggcttggcaacgcgcaagaactcattcaaaatggcacgtgcacgctttctgaggtgatc
ggctgccgcgacgacattatggtctatctcatttaccgcgggcttgagccgtcgctggcg
tttaaaattatggaatcggtgcgcaaagggaaaggattgacgccggaatttgaggcggag
atgcgcaagcataacgtgccggaatggtacatcgactcgtgcaaaaaaatcaaatacatg
ttcccgaaagcgcacgcggcggcctacgtgttgatggcggtgcgcatcgcctactttaag
gtgcaccatccgcttttgtattacgcgtcgtactttacggtgcgggcggaggactttgac
cttgacgctatgatcaaaggatcagccgccattcgcaagcggattgaggaaatcaacgcc
aaaggcattcaggcgacggcgaaagagaaaagcttgctcacggtgctggaagtggcgctg
gaaatgtgcgagcgcggcttttcctttaaaaatatcgacttgtaccgctcgcaggcgacc
gaatttgtcattgacggcaactcgcttattccgccgtttaacgccatcccggggctcggg
acgaacgtggcgcaaaacattgtgcgcgcccgcgaagaaggggagtttttgtcaaaagaa
gatttgcagcagcgcggcaaagtgtcgaaaacgctgcttgagtatctcgaaagccgcggc
tgcctcgactcgcttccggatcataaccagctgtccttgttctga
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