Geobacillus sp. LC300: IB49_16560
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Entry
IB49_16560 CDS
T04018
Symbol
truB
Name
(GenBank) tRNA pseudouridine synthase B
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
gel
Geobacillus sp. LC300
Brite
KEGG Orthology (KO) [BR:
gel00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
gel03016
]
IB49_16560 (truB)
Enzymes [BR:
gel01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
IB49_16560 (truB)
Transfer RNA biogenesis [BR:
gel03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
IB49_16560 (truB)
Prokaryotic type
IB49_16560 (truB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruB_N
TruB_C_2
PseudoU_synth_2
Ribosomal_S28e
Motif
Other DBs
NCBI-ProteinID:
AKU27743
LinkDB
All DBs
Position
3121809..3122717
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AA seq
302 aa
AA seq
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MDGVLLLNKPKGITSHDCVAKVRRLLGVKKVGHTGTLDPNVSGVLPLCLGKATRIAEFLT
GATKTYEGEVTLGAATTTEDADGDVVAVRPVERPIARVEIEAVFRRLIGEIEQTPPMYSA
VKVGGKKLYEYARAGIEVERPTRRVTIYELELLDDREQFVGETVSFRFRVTCSKGTYVRT
LAVTVGEQLGYPAHMSDLIRTASGPFRLEDCVTLEEVERRAADGTAAALLIPIEQALFHL
PKYEINDKVAEKVKNGALLRLPAFLHALDGPVVLVTPEREALALYVKHPARPGLMKPLKV
FR
NT seq
909 nt
NT seq
+upstream
nt +downstream
nt
atggacggggtattgctgctcaacaaaccaaaaggaataacgtcgcacgactgtgtggca
aaggtgcgccgcctgcttggggtaaaaaaagtcggccataccggcacgctcgatccaaac
gtgtccggcgtcctgccgctttgccttggcaaagcgacgcgcattgcggaatttcttacc
ggagcgacgaaaacgtacgagggggaagtgacgctcggcgcagcgacgacgaccgaagac
gccgacggtgacgtcgttgccgtccggccggtcgagcggccgattgcgcgggtggaaatc
gaagccgttttccgccgccttatcggggaaatcgagcaaacgccgcccatgtattcggcg
gtgaaagtcggcggcaaaaagctgtatgaatatgcgcgcgccggcattgaggtggagcgc
ccgacgcggcgcgtgacgatttacgagctcgagctgctcgatgatcgcgagcagtttgtc
ggggagacggtgtcatttcgcttccgcgtcacatgcagcaaaggcacgtatgtccgcacg
ctcgcagtgacggtcggcgagcagctcggctatccggctcatatgtccgatctcatccgc
acagcgtccggcccgtttcggcttgaagattgtgtgacgcttgaagaagtcgagcgccgg
gcggccgacggaacggccgccgccttgctcattccgatcgagcaagcgctttttcatttg
ccgaaatatgaaatcaatgataaagtagcagagaaagtaaaaaacggggcgctgctccgg
cttcccgcctttttgcatgcgcttgacgggccggtcgtgctcgtgacgcccgagcgggag
gcgctggccctgtatgtaaagcatccggcgcgcccgggcttgatgaaaccgctcaaagtg
tttcgttga
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