Geobacter sp. M21: GM21_0088
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Entry
GM21_0088 CDS
T00933
Name
(GenBank) 2'-5' RNA ligase
KO
K01975
RNA 2',3'-cyclic 3'-phosphodiesterase [EC:
3.1.4.58
]
Organism
gem
Geobacter sp. M21
Brite
KEGG Orthology (KO) [BR:
gem00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
gem03016
]
GM21_0088
Enzymes [BR:
gem01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.58 RNA 2',3'-cyclic 3'-phosphodiesterase
GM21_0088
Transfer RNA biogenesis [BR:
gem03016
]
Prokaryotic type
tRNA spricing factors
Other tRNA splicing factors
GM21_0088
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Gene cluster
GFIT
Motif
Pfam:
LigT_PEase
2_5_RNA_ligase2
AKAP7_NLS
Motif
Other DBs
NCBI-ProteinID:
ACT16175
UniProt:
C6E7Z2
LinkDB
All DBs
Position
complement(111478..112032)
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AA seq
184 aa
AA seq
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MPRLFVAIDLPEEIKASLSQLSCAVPGARWVDPSQIHLTLRFIGDVDPQTVSRIKKVLSV
VQFAPFPLSVAGVGHFPPRGFPRVLWVGVEPRPELMALQQRIESALQRAGVSPEERPFSP
HITLARLKETPPAAVAALESSHRGLAYPPFPATQYVLYSSVLTPKGAIHRKEEIFRLSEE
APLR
NT seq
555 nt
NT seq
+upstream
nt +downstream
nt
ttgccaagactcttcgtcgccatcgatctgccggaagaaataaaagcctctctctcacag
ctttcctgtgctgtgccaggtgcccgatgggttgacccttcccaaatccatctcacctta
cgcttcataggagacgtcgaccctcagacagtttccagaataaagaaggtcctgtcagtt
gtgcagttcgccccttttcccctcagcgtagccggggtcggccacttccccccgcgcggg
ttcccccgcgtcctttgggtcggggtggaaccgcgccccgaactcatggccctgcagcag
cggatcgaatcggcgctgcaacgggcaggggtttctccggaagagcgccccttctccccg
cacataacgctcgcccgcctgaaagagaccccccccgccgcggtcgccgccttagagtcg
tcgcaccgaggactcgcctacccacctttccccgccacgcagtacgtactctactccagc
gtcctcacgcccaaaggcgccatccaccgcaaggaagagatctttcgcttgagcgaagaa
gcgcctttacgctaa
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