KEGG   Geobacter sp. M21: GM21_0197
Entry
GM21_0197         CDS       T00933                                 
Name
(GenBank) transcription-repair coupling factor
  KO
K03723  transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
Organism
gem  Geobacter sp. M21
Pathway
gem03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:gem00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    GM21_0197
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:gem03400]
    GM21_0197
Enzymes [BR:gem01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     GM21_0197
DNA repair and recombination proteins [BR:gem03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     TRCF (transcription-repair coupling factor)
      GM21_0197
SSDB
Motif
Pfam: TRCF UvrB_inter DEAD Helicase_C CarD_TRCF_RID ResIII RecG_dom3_C MFD_D3 UB2H ERCC3_RAD25_C AAA_22 DUF4388 SecA_DEAD
Other DBs
NCBI-ProteinID: ACT16282
UniProt: C6E8Z3
LinkDB
Position
235066..238539
AA seq 1157 aa
MTIPVPEYLKSIKEKLAPEKSRLSVAGVDGSAPAYLLSRLMTESGPPLVVITADQESADE
LARELRFFSCSHGAVLPFPGWDVTPFEAASPHPDLVGERLNALVRLLDGGARAVVVPLAA
ALQRVIPRETLGGVCQYLVAGEELERETLVEKLVKLGYSHVPIVEDRGSFSVRGGILDIF
PPDQERPVRIEFFGDLVETMRLFDPVTQRSLEPLAELVLLPSREVILSEGVVKEFTPRLK
RRCDHLGIGADRRRELLEQLQQAIYPPGVDFLQPLFHPGLETLFDYAGPGATRVLVDPAA
IAEAGERFEADLAKAAARAELRDAITCDPDDLYLTAAELDSMLSDGRRLEFPRLELAGEG
GETLRLRCSTNSDLKLGVSPEGERVLAPLTEKMVTWIAAGNRVLIPCHQAGQARRLYELL
SHYRLPLDSTQDCFADAARRPPGRVEILTGEISRGFRLEEERLVVVAEEEIFGKRVKRRG
LSEAKKQQLLTSLAELKPGDHMVHVDFGVAIYRGLQHLSLTGLEGDFLLLEYAGGDKLYL
PVDRINLVQRYVGAEGIEPRLDRLGAAGWEKAKAKARAEVQEMAAELLKIHAAREVQQGF
KFSPADDMYRAFEASFAFEETPDQAAAIDQVIADMESPRPMDRLVCGDVGYGKTEVAMRA
AFKSTLDGKQVAILVPTTVLAQQHAESFASRLKDYPVRVEMLSRFRTPQQQKQILEGVKK
GEVDIVIGTHRLLQKDVVFKDLGLLIVDEEQRFGVAHKERLKQFRAVVDILTLTATPIPR
TLYMSLMGIRDLSIIDTPPVDRLAIKTFVSRSSDELIREAVLRELRRGGQVFFVHNRVQT
IGAMAEELKRIVPEAKIAVGHGQMAEKELEQVMLSFMHGETNLLLCTTIIESGLDIPTAN
TLIVNRADTFGLSQLYQLRGRVGRSKSRAYAYLLIPGEGAISPEARERLKILQELTELGA
GFRIATHDLELRGAGDLLGARQSGDIAAVGFELYTELLDEAVRTLKGEALPERVEPEIKL
KVPAFIPEDYVRDPNQRLMIYKKLTQPTDEAEIDDIRAELADRFGQLPVAAVYLLEVMRL
RVTLKRLLVKEIELAGNELVLSFHERTPVSPDAIMALLRKEKGKYRFTPDFRLYARLADG
SFDGVLAESRNLLKCLG
NT seq 3474 nt   +upstreamnt  +downstreamnt
atgaccatacccgtacccgaatacctgaagagcattaaggaaaaactcgcccccgaaaag
agccggctcagcgtcgccggggtggacggctccgccccggcctacctgttgtcgcggctc
atgaccgagtccggcccaccgctcgtggttatcaccgccgaccaggagagcgcggacgag
cttgcccgcgagctgcgctttttcagctgcagccacggtgcggtgctacccttccccggc
tgggacgtcacccccttcgaggcagccagtccccacccggacctcgtgggggagcggctg
aacgccctagtgcgccttctggacggcggcgcccgggccgtggtggtgccgcttgccgcc
gcgctgcagcgggtgattccgcgcgagaccttggggggcgtctgccagtaccttgtggcc
ggcgaggaactggagcgcgagaccctggtcgagaagctggtgaagctcggctactcccat
gtccccatcgtcgaggaccgggggagcttctcggtgcggggggggatcctggacatcttc
ccccccgaccaggagaggccggtgcgcatcgagttcttcggcgacctggtcgagaccatg
cgcctcttcgacccggtcacccagcgctcgctggagccgcttgccgaactggtgctgctc
ccctcgcgcgaggtgatcctgtcggagggggtggtcaaggagttcacgccgagactgaag
cggcgctgcgaccacctggggatcggggccgaccggcgccgcgagcttttggaacagctg
cagcaagcgatctaccccccgggggtggacttcctgcagccgctcttccacccggggctg
gagacgctcttcgactacgcaggccccggcgccacccgcgtcctcgtcgacccggccgcc
atcgcggaggcgggcgagcgcttcgaggcggatctcgccaaggcggcggcccgcgccgag
ttgcgcgacgccatcacctgcgaccccgacgacctctacctcaccgccgcggagctggac
agcatgctgagcgacgggcgccgcctggaattcccccgcctggagttggccggggaaggg
ggggaaaccctccgcctcagatgttccaccaatagcgacctgaagctcggggtgagccct
gagggcgagcgggtcctggcccccctgaccgagaagatggtgacctggatcgcggcggga
aaccgcgtgctcatcccgtgccatcaggcggggcaggcccgaaggctctacgagctcctt
tcgcactaccggcttccgctcgactccacccaggactgcttcgcggacgcggcgagacgc
cccccgggccgggtcgagatcctgaccggagagatctcccgcggcttcaggcttgaggaa
gagcgcctggtcgtggtcgccgaggaggagatcttcggcaagagggtgaagcggcgcggg
ctctccgaggcgaagaagcagcagcttctcacctcgctcgccgagttgaagccgggcgac
cacatggtgcacgtcgacttcggcgtcgccatctaccgcggactccagcacctgagcctc
accgggttggagggggacttcctgctcctggagtacgccggcggcgacaagctctacctc
ccggtggaccgcatcaacctggtgcagcgctacgtgggggccgaggggatcgagccgagg
ctcgaccgtctcggcgcggcgggttgggaaaaggccaaggcgaaggcgagagccgaggtg
caggagatggcggccgaactcctgaagatccacgccgcgcgcgaggtgcagcagggattc
aagttctcccccgccgacgacatgtaccgcgctttcgaggcgtccttcgccttcgaggag
accccggaccaggccgcggccatagaccaggtgatcgcggacatggaaagcccgcgcccc
atggaccggctggtctgcggcgacgtcggctacggcaagaccgaggtagccatgcgcgcc
gccttcaagtcgaccctggacggtaagcaagtggcgatcctggtccccaccaccgtcctc
gcccagcagcacgccgagagtttcgcctcgcggctcaaggattacccggtccgggtggag
atgctctcgcgcttcaggaccccccagcagcaaaagcagatcctggaaggggtgaagaaa
ggggaggtcgacatcgtcatcggcacccacaggcttttgcaaaaggacgtggtcttcaag
gacctgggacttttgatcgtcgacgaggagcagcgcttcggcgtggcccacaaggaaagg
ctcaagcagttccgcgccgtggttgacatcctcaccctcaccgcgaccccgattccgcgc
accctctacatgtcgctcatggggatacgcgacctctccatcatcgacacgccgccggtg
gaccggctcgccatcaagaccttcgtctcccgctcctcggacgagctgatccgggaggcg
gtactgagggagcttaggcgcggcgggcaggtattcttcgtccacaaccgggtgcagacc
ataggagccatggccgaggaactcaagcgcatcgtccccgaggcgaagatcgcggtgggg
cacggccagatggccgagaaggagctggagcaggtgatgctctccttcatgcatggcgag
accaacctccttctttgcaccaccatcatcgaaagcggcctcgacatcccgaccgccaac
acgctgatcgtgaaccgggccgacaccttcgggctgtcgcagctctaccagttgcgcggc
agggtgggacgctcgaaaagccgcgcctacgcctatctcctcatcccgggcgagggggcc
atctcgccggaggcccgggagcggctgaagatcctgcaggagttgaccgagctgggggcg
gggttcaggatcgccacccacgacctggagctcaggggcgccggcgaccttctgggggcg
cggcaaagcggggacatcgcggcggtgggattcgaactctacacagaacttctggacgag
gcggtgcgcacccttaagggtgaggccctgccggagcgggtcgagcccgagatcaagctc
aaggttcccgccttcatcccggaggattacgtacgggacccgaaccagcgcctgatgatc
tacaagaaactgacccagccgaccgacgaggcggagatagacgatatccgggcggaactc
gccgaccgcttcgggcaactgccggtggcggcggtctacctgttggaggtgatgcgcctg
cgggtgacgctgaagcggctcctggtgaaggagatcgagctggccggcaacgagctggtc
ctctccttccacgagcggacccccgtctcccccgacgccatcatggctttgctcaggaag
gagaaggggaaataccgcttcacgccggacttccgcctctacgcccgcctggcagacggc
tccttcgacggggtcctggccgagtctagaaatctcttgaaatgcctaggctga

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