Geobacter sp. M21: GM21_0197
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Entry
GM21_0197 CDS
T00933
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
gem
Geobacter sp. M21
Pathway
gem03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
gem00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
GM21_0197
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gem03400
]
GM21_0197
Enzymes [BR:
gem01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
GM21_0197
DNA repair and recombination proteins [BR:
gem03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
GM21_0197
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
Helicase_C
CarD_TRCF_RID
ResIII
RecG_dom3_C
MFD_D3
UB2H
ERCC3_RAD25_C
AAA_22
DUF4388
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
ACT16282
UniProt:
C6E8Z3
LinkDB
All DBs
Position
235066..238539
Genome browser
AA seq
1157 aa
AA seq
DB search
MTIPVPEYLKSIKEKLAPEKSRLSVAGVDGSAPAYLLSRLMTESGPPLVVITADQESADE
LARELRFFSCSHGAVLPFPGWDVTPFEAASPHPDLVGERLNALVRLLDGGARAVVVPLAA
ALQRVIPRETLGGVCQYLVAGEELERETLVEKLVKLGYSHVPIVEDRGSFSVRGGILDIF
PPDQERPVRIEFFGDLVETMRLFDPVTQRSLEPLAELVLLPSREVILSEGVVKEFTPRLK
RRCDHLGIGADRRRELLEQLQQAIYPPGVDFLQPLFHPGLETLFDYAGPGATRVLVDPAA
IAEAGERFEADLAKAAARAELRDAITCDPDDLYLTAAELDSMLSDGRRLEFPRLELAGEG
GETLRLRCSTNSDLKLGVSPEGERVLAPLTEKMVTWIAAGNRVLIPCHQAGQARRLYELL
SHYRLPLDSTQDCFADAARRPPGRVEILTGEISRGFRLEEERLVVVAEEEIFGKRVKRRG
LSEAKKQQLLTSLAELKPGDHMVHVDFGVAIYRGLQHLSLTGLEGDFLLLEYAGGDKLYL
PVDRINLVQRYVGAEGIEPRLDRLGAAGWEKAKAKARAEVQEMAAELLKIHAAREVQQGF
KFSPADDMYRAFEASFAFEETPDQAAAIDQVIADMESPRPMDRLVCGDVGYGKTEVAMRA
AFKSTLDGKQVAILVPTTVLAQQHAESFASRLKDYPVRVEMLSRFRTPQQQKQILEGVKK
GEVDIVIGTHRLLQKDVVFKDLGLLIVDEEQRFGVAHKERLKQFRAVVDILTLTATPIPR
TLYMSLMGIRDLSIIDTPPVDRLAIKTFVSRSSDELIREAVLRELRRGGQVFFVHNRVQT
IGAMAEELKRIVPEAKIAVGHGQMAEKELEQVMLSFMHGETNLLLCTTIIESGLDIPTAN
TLIVNRADTFGLSQLYQLRGRVGRSKSRAYAYLLIPGEGAISPEARERLKILQELTELGA
GFRIATHDLELRGAGDLLGARQSGDIAAVGFELYTELLDEAVRTLKGEALPERVEPEIKL
KVPAFIPEDYVRDPNQRLMIYKKLTQPTDEAEIDDIRAELADRFGQLPVAAVYLLEVMRL
RVTLKRLLVKEIELAGNELVLSFHERTPVSPDAIMALLRKEKGKYRFTPDFRLYARLADG
SFDGVLAESRNLLKCLG
NT seq
3474 nt
NT seq
+upstream
nt +downstream
nt
atgaccatacccgtacccgaatacctgaagagcattaaggaaaaactcgcccccgaaaag
agccggctcagcgtcgccggggtggacggctccgccccggcctacctgttgtcgcggctc
atgaccgagtccggcccaccgctcgtggttatcaccgccgaccaggagagcgcggacgag
cttgcccgcgagctgcgctttttcagctgcagccacggtgcggtgctacccttccccggc
tgggacgtcacccccttcgaggcagccagtccccacccggacctcgtgggggagcggctg
aacgccctagtgcgccttctggacggcggcgcccgggccgtggtggtgccgcttgccgcc
gcgctgcagcgggtgattccgcgcgagaccttggggggcgtctgccagtaccttgtggcc
ggcgaggaactggagcgcgagaccctggtcgagaagctggtgaagctcggctactcccat
gtccccatcgtcgaggaccgggggagcttctcggtgcggggggggatcctggacatcttc
ccccccgaccaggagaggccggtgcgcatcgagttcttcggcgacctggtcgagaccatg
cgcctcttcgacccggtcacccagcgctcgctggagccgcttgccgaactggtgctgctc
ccctcgcgcgaggtgatcctgtcggagggggtggtcaaggagttcacgccgagactgaag
cggcgctgcgaccacctggggatcggggccgaccggcgccgcgagcttttggaacagctg
cagcaagcgatctaccccccgggggtggacttcctgcagccgctcttccacccggggctg
gagacgctcttcgactacgcaggccccggcgccacccgcgtcctcgtcgacccggccgcc
atcgcggaggcgggcgagcgcttcgaggcggatctcgccaaggcggcggcccgcgccgag
ttgcgcgacgccatcacctgcgaccccgacgacctctacctcaccgccgcggagctggac
agcatgctgagcgacgggcgccgcctggaattcccccgcctggagttggccggggaaggg
ggggaaaccctccgcctcagatgttccaccaatagcgacctgaagctcggggtgagccct
gagggcgagcgggtcctggcccccctgaccgagaagatggtgacctggatcgcggcggga
aaccgcgtgctcatcccgtgccatcaggcggggcaggcccgaaggctctacgagctcctt
tcgcactaccggcttccgctcgactccacccaggactgcttcgcggacgcggcgagacgc
cccccgggccgggtcgagatcctgaccggagagatctcccgcggcttcaggcttgaggaa
gagcgcctggtcgtggtcgccgaggaggagatcttcggcaagagggtgaagcggcgcggg
ctctccgaggcgaagaagcagcagcttctcacctcgctcgccgagttgaagccgggcgac
cacatggtgcacgtcgacttcggcgtcgccatctaccgcggactccagcacctgagcctc
accgggttggagggggacttcctgctcctggagtacgccggcggcgacaagctctacctc
ccggtggaccgcatcaacctggtgcagcgctacgtgggggccgaggggatcgagccgagg
ctcgaccgtctcggcgcggcgggttgggaaaaggccaaggcgaaggcgagagccgaggtg
caggagatggcggccgaactcctgaagatccacgccgcgcgcgaggtgcagcagggattc
aagttctcccccgccgacgacatgtaccgcgctttcgaggcgtccttcgccttcgaggag
accccggaccaggccgcggccatagaccaggtgatcgcggacatggaaagcccgcgcccc
atggaccggctggtctgcggcgacgtcggctacggcaagaccgaggtagccatgcgcgcc
gccttcaagtcgaccctggacggtaagcaagtggcgatcctggtccccaccaccgtcctc
gcccagcagcacgccgagagtttcgcctcgcggctcaaggattacccggtccgggtggag
atgctctcgcgcttcaggaccccccagcagcaaaagcagatcctggaaggggtgaagaaa
ggggaggtcgacatcgtcatcggcacccacaggcttttgcaaaaggacgtggtcttcaag
gacctgggacttttgatcgtcgacgaggagcagcgcttcggcgtggcccacaaggaaagg
ctcaagcagttccgcgccgtggttgacatcctcaccctcaccgcgaccccgattccgcgc
accctctacatgtcgctcatggggatacgcgacctctccatcatcgacacgccgccggtg
gaccggctcgccatcaagaccttcgtctcccgctcctcggacgagctgatccgggaggcg
gtactgagggagcttaggcgcggcgggcaggtattcttcgtccacaaccgggtgcagacc
ataggagccatggccgaggaactcaagcgcatcgtccccgaggcgaagatcgcggtgggg
cacggccagatggccgagaaggagctggagcaggtgatgctctccttcatgcatggcgag
accaacctccttctttgcaccaccatcatcgaaagcggcctcgacatcccgaccgccaac
acgctgatcgtgaaccgggccgacaccttcgggctgtcgcagctctaccagttgcgcggc
agggtgggacgctcgaaaagccgcgcctacgcctatctcctcatcccgggcgagggggcc
atctcgccggaggcccgggagcggctgaagatcctgcaggagttgaccgagctgggggcg
gggttcaggatcgccacccacgacctggagctcaggggcgccggcgaccttctgggggcg
cggcaaagcggggacatcgcggcggtgggattcgaactctacacagaacttctggacgag
gcggtgcgcacccttaagggtgaggccctgccggagcgggtcgagcccgagatcaagctc
aaggttcccgccttcatcccggaggattacgtacgggacccgaaccagcgcctgatgatc
tacaagaaactgacccagccgaccgacgaggcggagatagacgatatccgggcggaactc
gccgaccgcttcgggcaactgccggtggcggcggtctacctgttggaggtgatgcgcctg
cgggtgacgctgaagcggctcctggtgaaggagatcgagctggccggcaacgagctggtc
ctctccttccacgagcggacccccgtctcccccgacgccatcatggctttgctcaggaag
gagaaggggaaataccgcttcacgccggacttccgcctctacgcccgcctggcagacggc
tccttcgacggggtcctggccgagtctagaaatctcttgaaatgcctaggctga
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