Geobacter sp. M21: GM21_0221
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Entry
GM21_0221 CDS
T00933
Name
(GenBank) 3'-5' exonuclease
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
gem
Geobacter sp. M21
Brite
KEGG Orthology (KO) [BR:
gem00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
gem03016
]
GM21_0221
Enzymes [BR:
gem01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
GM21_0221
Transfer RNA biogenesis [BR:
gem03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
GM21_0221
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
Motif
Other DBs
NCBI-ProteinID:
ACT16306
UniProt:
C6DY31
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All DBs
Position
265179..266312
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AA seq
377 aa
AA seq
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MQKRNNVTNPAAAHLVTDQKTLDELVERLSRESVLAFDLEADSLHHYTEKVCLIQVSSAS
EDRLIDPLAPIDVKVLAPIFANPAIKKIFHGADYDMRSLYRDFGIEVVNLFDTMIASQFL
GESEFGLAALLKKRFGVELDKRYQKADWSKRPFSQEMLDYAMKDTSLLIELYRQLEAELK
QKGRLAWVEEESELVAGVRSPSREGELMCLRFKGASKMKPRELAVLEELLRFRDEKARLA
DVPPFRILSNDLLRELAEKQPRNNFELVGIHTMSSKLIERLGRGLLQAIANGLAVPQDKL
PQVQSGRRPVLDRLQDERVKRLKVWREAKSAQLGLGIGLVANNTLLEALAEPGSQNTTLL
KRWQREAFGDELASLIS
NT seq
1134 nt
NT seq
+upstream
nt +downstream
nt
ttgcagaagagaaataatgtgacaaaccccgcagcggcacatctggtaaccgatcaaaag
actttagacgaactcgttgagcggctctccagggaatcggtccttgcctttgacttggag
gcggactccctccatcactatactgagaaggtgtgcctgatccaggtctcttccgcatcg
gaagatcgcctgatcgacccgctcgctcccatagacgtcaaggtgctggcgcccatcttc
gccaacccggcgatcaagaagatcttccacggcgcggactacgacatgcgctcgctctac
cgggacttcggcatcgaggtggtgaacctgttcgacaccatgatcgccagccagttcctg
ggagagagcgagttcggcctggcggcgctccttaagaagaggttcggggtcgagctggac
aagcgctaccaaaaggccgactggagcaagcgccccttctcccaggagatgctggattac
gccatgaaggacacttccctcctgatcgagctctaccgccagctggaggcggagctgaag
cagaaggggaggctcgcctgggtcgaggaggagtcggagttggtggcaggggtgcgttcc
ccttcccgcgagggggaactgatgtgcctgcgcttcaagggggccagcaagatgaagccg
cgcgagctcgccgtgctggaagagcttctgcgcttccgtgacgagaaggcgcgcctggcg
gatgtccctcccttcaggatcctcagcaacgacctgttgcgggagctggcagagaaacag
ccgaggaataacttcgagctggtcggcatccacaccatgtcctccaaactgatagaacgg
ctggggcgcgggctgctgcaggccatagcaaacgggctggcggtcccccaggacaagctc
ccgcaggtgcagtccgggcgccgaccggttctggaccggctgcaggacgaaagggtgaag
cgcctcaaggtctggcgcgaggcgaagtcggcgcagctgggtctcggtatcgggctcgtc
gccaacaacacgctcctggaggcgctggcggaaccgggctcccagaacacaactctcttg
aagcgctggcagcgcgaggcgttcggggacgagctggcctcgctcatctcctga
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