Geobacter sp. M21: GM21_0954
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Entry
GM21_0954 CDS
T00933
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
gem
Geobacter sp. M21
Pathway
gem03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gem00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GM21_0954
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gem03019
]
GM21_0954
Enzymes [BR:
gem01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
GM21_0954
Messenger RNA biogenesis [BR:
gem03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
GM21_0954
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Flavi_DEAD
NAT10_TcmA_helicase
AAA_22
Utp25_C
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
ACT17020
UniProt:
C6E274
LinkDB
All DBs
Position
1131969..1133330
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AA seq
453 aa
AA seq
DB search
MDFKQFNLHPKVQAGIEAMGYVTPTPIQLQAIPSVVSGQDVLGLAQTGTGKTAAFGLPML
HRLVQEERGHVRGLVLAPTRELAEQINEALNGMGKQTRLRSITVYGGVNINTQIKKLKEG
AEIVVACPGRLLDHISQGTIDLSKVEILVLDEADQMFDMGFLPDVRKILRALPGKRQNLM
FSATMPDDIRRLAHEILRNPVTVQVSRTAPAATVSHALYPVGQHLKTPLLFEMLKHTDTE
SVLIFTKTKHRAKRVGEQLEKAGYKATSLQGNLSQNRRQAALDGFRDGTFQIMVATDIAA
RGIDVSLISHVINYDIPDTPEAYTHRIGRTGRAAKTGDAFTMVTSEDDYTVRAIEKVLGT
KIERRRFEGFDYAVPAPQKDAEFARPPREPQRRRDGAKPGAGKPAAARPAGAKPAGAKPA
SAAGAKSSAAASGRPAAPGGKRPTNHAARRSGR
NT seq
1362 nt
NT seq
+upstream
nt +downstream
nt
gtggatttcaaacagtttaatttgcaccccaaggtccaggcaggcatcgaggccatgggg
tacgtcaccccgacccccatccaattacaggcgatcccctcggtcgtctccgggcaggac
gtactcggcctggcgcagaccggtaccggcaagaccgccgctttcggccttcccatgctg
caccgcctggtgcaggaagagcgcgggcatgtccgcggcctggtcttggcccccacccgc
gagcttgccgagcagatcaacgaagccttgaacggcatggggaagcagacccgcctgaga
agcatcacggtctatggcggggtcaacatcaacacccagatcaagaagctgaaagaaggt
gccgaaatcgtcgtcgcctgcccggggcgccttttggaccacatctcccaggggaccatc
gacctctcgaaggtggagatcctggtgctggacgaggcggaccagatgttcgacatgggc
tttctccccgacgtgaggaagatcttgagggcgctccccggcaagaggcagaacctgatg
ttctccgccaccatgcccgacgacatccgcaggctggctcacgagatcctgcgcaacccg
gtcacggtgcaggtgagccgtaccgctcccgccgctaccgtatcccatgcgctctacccc
gtggggcagcacctgaaaaccccgcttctcttcgagatgctgaagcacaccgacaccgag
agcgtgctcatcttcaccaagaccaagcaccgcgccaagagggtgggggagcaactggag
aaggcgggctacaaggcgacctcgctgcaggggaacctttcccagaacagaaggcaggca
gcgctcgacggcttcagggacggcaccttccagatcatggtcgccaccgacatcgccgcg
cgcggcatcgacgtctcgctcatctcccacgtcatcaactacgacatcccggacaccccc
gaggcctacacccaccgcatcggccggaccgggcgcgccgcgaagaccggcgacgccttc
accatggtgacctcggaagacgactacacggtgcgcgccatcgagaaggtgctgggaacg
aagatcgagcgccgccgtttcgaggggttcgactacgcggtccccgcgccgcaaaaagac
gccgagttcgcccggccgccccgcgaaccgcaacgccgcagagacggcgccaagcccggc
gccggcaaacccgccgcggccaggcccgctggggccaaaccggctggagccaaaccggct
tcagctgcgggcgcaaaaagtagcgcggccgcttccggccgccccgccgctcccggcggc
aagcgccccacgaaccacgcagcccgccgtagcggcaggtag
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