Geobacter sp. M21: GM21_1169
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Entry
GM21_1169 CDS
T00933
Name
(GenBank) DNA polymerase III, alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
gem
Geobacter sp. M21
Pathway
gem03030
DNA replication
gem03430
Mismatch repair
gem03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
gem00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
GM21_1169
03430 Mismatch repair
GM21_1169
03440 Homologous recombination
GM21_1169
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
gem03032
]
GM21_1169
03400 DNA repair and recombination proteins [BR:
gem03400
]
GM21_1169
Enzymes [BR:
gem01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
GM21_1169
DNA replication proteins [BR:
gem03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
GM21_1169
DNA repair and recombination proteins [BR:
gem03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
GM21_1169
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
ACT17230
UniProt:
C6E357
LinkDB
All DBs
Position
1358337..1361804
Genome browser
AA seq
1155 aa
AA seq
DB search
MDSANFVHLHLHSQYSLLDGAIRIGDLLKKVKECHMPAVAMTDHGNMFGTLEFYLKCKDK
GIKPIIGSEVYIAPQSRLLKQAPAAGEANSYHLILLCENMTGFKNLSYLVSAGYKEGFYR
RPRIDKELLLKHKEGLIVLSACLQGEVAYLAGRNKMDEARAAASWYAENFPGSYYIELQE
NKLPEQDVANRRLMEIAREMDLPLVATNDCHYLNREDARAHEILLCIQTGKTMSDPNRMA
FSVDEFYVKTPEEMAAAFHYAPEALSNTVKIAERCHLEFDFNTYYFPAYEAPEGETLDQQ
LERESKAGLIERLKKIRIKYNLTEEQEQGYHARLRIELDCIKQMGFPGYFLIVADFINWA
KDHGIPVGPGRGSAAGSLVAFCIRITDIDPMPYNLLFERFLNPERISMPDIDVDFCQDRR
EEVIQYMVEKYGREKVCQIITFGTMAARGVIRDVGRALDLTFGEVDRIAKLVPEVLGITL
EKALEQEPKLKELMAADPKVKEVMTVALRLEGLARHASTHAAGLVVAPRQMEEFCPVYKD
QKTGSLTTQYSMKYVEKIGLVKFDFLGLKNLTVIDNACKHIRNGKDPNFDITLLRDDDAE
SYKLLQAGNTTGVFQLESSGMKELLVKLKPSCFEDIIAVCALYRPGPLGSGMVDDFIERK
HGRKQTVYDLPQLEPVLKDTYGVIVYQEQVMQISRSLAGYSLGGADLLRRAMGKKDAEQM
AKERDKFLEGSEKLGLDGKKCAAIFDLMAKFAEYGFNKSHSAAYALVAYQTAFLKAHYPV
EFMAALLTEDMGNTDKVIKSIGDCREMGIEVLPPDINESDRSFRVLDKAMRFGLGAVKNV
GEGAIEAIIEARGDEPFKDLFDFCERVDLRRVNKRVIEALIKCGAFDCTGAKRSQLMAGL
EDAAATGQRVQQERESAQASLFGAAEIVRGGNGGGNRLPDIPEWDEKYRLGCEKEAIGFF
ITGHPLDRYVADMRRFSTVDCSTILDAKEKGEVRICGVPSTVKELITKKGDRMAFLALED
LVGSVEVVVFPETYAKCSEVLRGDDPIHVTGTVELSEKGAKVMASDIILLRDLVERETRK
VNFTIDAKEADEGKLKTLKDIISRYQGICRSFLHLDIENSSRVTIKLPDVYKVSASEELT
VEVSNLFGYNAVSFE
NT seq
3468 nt
NT seq
+upstream
nt +downstream
nt
atggattcagcaaatttcgttcaccttcatctccactcccagtattcgctcctcgacggg
gcgatccgcatcggtgacctcctgaagaaggtgaaggagtgccacatgccggccgtggcc
atgaccgaccacggcaacatgttcggcacccttgagttctatttgaagtgcaaggacaag
gggatcaaaccgatcatcggcagcgaggtgtacatcgcgccgcagtcgcgccttcttaag
caggcgccggccgcaggcgaggcgaacagctaccacctgatcctcctgtgcgaaaacatg
accggcttcaagaacctctcctacctggtttccgccggctacaaggaagggttctaccgc
cgcccccgcatcgacaaggaactgctgctaaagcacaaggaaggtctcatcgtcctctcc
gcctgcctgcagggcgaggtcgcctaccttgcgggcaggaacaagatggacgaggcgcgc
gccgcggcctcctggtacgccgagaacttccccgggagctactacatagagctgcaggaa
aacaagctccccgagcaggacgtcgccaatcgcaggctcatggagatcgcgcgggaaatg
gacctgccgctcgtcgccaccaacgactgccattacctgaaccgcgaggacgcgcgcgcc
cacgagatcctcctctgcatccagaccggcaagaccatgagcgatcccaaccgcatggcg
ttctccgttgacgagttctacgtgaagactccggaggagatggcggcggcctttcattac
gccccggaggcgctcagcaacaccgtcaagatcgccgagcgctgccacctggaattcgac
ttcaacacctactactttcccgcctacgaggcgccggaaggggagacgctggaccagcaa
cttgagcgggagtccaaggcgggcctcatcgagcggctcaagaagatccgcatcaagtac
aacctcaccgaggagcaggaacagggctaccacgcccggctgcgcatcgagctggactgc
atcaagcagatggggttcccgggctacttcctgatcgtcgccgacttcatcaactgggcc
aaggaccacggcatccccgtcggccccggcaggggttccgcggcgggttctctcgtcgcc
ttctgcatcaggatcaccgacatcgatcccatgccgtacaacctcctcttcgagcgattc
ctgaacccggaacgtatctccatgccggatatcgacgtcgacttctgccaggatcgccgc
gaagaggtgatccagtacatggtcgagaagtacggccgggagaaggtctgccagatcatc
accttcggcaccatggcggcgcgcggcgtcatccgcgacgtggggcgcgcgctcgatctc
accttcggcgaggtggaccggatcgcgaagctggtcccggaggtgctcgggataaccctt
gagaaggcgctggagcaggagccgaagctgaaggagctgatggcggccgacccgaaggtg
aaggaggtcatgaccgtcgcgctcaggctggaggggctcgcccgccacgcctcgacgcat
gcggccggcctcgtggtcgcaccacgccagatggaggaattctgccccgtctacaaggac
cagaagaccggctccttgaccacgcagtactccatgaagtacgtggagaagatcggcctg
gtgaagttcgacttcctggggctcaagaacctcaccgtcatagacaacgcctgcaagcac
atcagaaacggcaaggaccccaacttcgacatcacccttttgcgcgacgacgacgcggag
tcctacaagctcttgcaggccggcaacacgacaggcgtcttccaactcgagtccagcggc
atgaaggagctcctggtcaagctgaagccctcctgcttcgaggacatcatcgcggtctgc
gccctctaccgtccgggtccgctcggcagcggcatggtcgacgacttcatcgaaagaaag
cacggccgcaagcagaccgtttacgacctgccgcagcttgagccggtcctgaaagacacc
tacggcgtcatcgtctaccaggaacaggtcatgcagatctcccgatcgctcgccggctac
tcgcttgggggcgcggaccttctgcgccgcgccatgggcaagaaggacgccgagcagatg
gcgaaagagcgcgacaagttcctggaggggagcgagaagctgggcctcgacgggaagaag
tgcgctgccatattcgacctgatggcgaaattcgccgagtacggcttcaacaagtcgcac
tcggcagcctacgcgctggtcgcctatcagaccgcattcctcaaggcacactacccggtc
gagttcatggctgccctcttgaccgaggacatgggtaacaccgacaaggtcatcaagagc
atcggcgactgccgcgagatggggatcgaggtgctcccccccgacatcaacgagtcggac
cgctccttccgcgtgctggacaaggcgatgcgctttggtctgggcgcggtcaagaacgtg
ggcgaaggtgccatcgaggcgatcatcgaggcgcgcggcgacgagccgttcaaggacctc
ttcgatttctgcgagcgcgtcgacctgcgccgggtcaataaaagggtgattgaggcgctc
atcaagtgcggcgccttcgactgcaccggcgccaagcgctcgcagctcatggcggggctg
gaggatgccgcggcgacggggcagagggtgcagcaggagcgcgagagcgcgcaggcgtcg
cttttcggcgccgccgagatcgtgcgtggcggcaacggcggcggcaaccggcttcccgac
atccccgagtgggacgagaagtaccggctcggctgcgagaaggaggctatcggcttcttc
atcaccgggcatccgctggaccgctacgtcgccgacatgaggcgcttttccaccgtggac
tgctccaccatcctggacgccaaggagaagggcgaggtgaggatctgcggcgtacctagc
acagtgaaggagctgatcaccaagaaaggggaccggatggccttcctcgcgctggaggac
ctggtgggctcggtcgaggtggtggtctttccggaaacctacgccaagtgctccgaggtg
ttaaggggggacgatcccatccacgtcaccggcaccgtcgagctgagcgagaagggggcc
aaggtgatggcgagcgacatcatactcttgcgcgacctggtggagcgtgaaacgagaaag
gtcaatttcaccatagacgccaaagaggccgacgaagggaagctcaaaacgctcaaggac
atcatctcccgctatcagggaatctgtcgcagcttcctgcaccttgacatagagaacagc
tccagagtcaccatcaagcttcccgatgtatacaaagtctcggcaagtgaagaattaaca
gtggaagtgagcaacctcttcggctataatgccgtgtccttcgagtga
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