Geobacter sp. M21: GM21_1567
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Entry
GM21_1567 CDS
T00933
Name
(GenBank) superfamily I DNA and RNA helicase-like protein
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
gem
Geobacter sp. M21
Pathway
gem03420
Nucleotide excision repair
gem03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
gem00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
GM21_1567
03430 Mismatch repair
GM21_1567
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gem03400
]
GM21_1567
Enzymes [BR:
gem01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
GM21_1567
DNA repair and recombination proteins [BR:
gem03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
GM21_1567
MMR (mismatch excision repair)
Other MMR factors
GM21_1567
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
Viral_helicase1
UvrD_C
UvrD_C_2
AAA_19
AAA_30
SLFN-g3_helicase
AAA_22
AAA_12
nSTAND3
AAA_16
ResIII
NPHP3_N
Motif
Other DBs
NCBI-ProteinID:
ACT17622
UniProt:
C6E593
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All DBs
Position
1826660..1828549
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AA seq
629 aa
AA seq
DB search
MEIVQQEVKRLDGIHEAIERYAVDRLRTIAKHEAYTKELEQERLNAVGWHEKNDLTEKLV
EHGHHSPRKYLHEYTQQASPYFGILGIHDNDRRIGRKEYLIGNQTLMDGQRVAIVDWRKA
EITGPFYEGYDIGEEYELTIRGVEREGVITRRDKVTITRKALNRIETPTEVYELRGGEWG
KNGAACESSADTKERTEDHRMVDSIAALISPEQFRAITKQREGVVVINGAAGAGKTTVAL
HRLSFLMFDAPEKYRPERCIVLMFNRVLRDYVKQSSDALLGPVRVDTYSAWSLTALAALG
VHSLKTSFDDPFGAQKKSSMMPALLAKYVKETAKIEPVTDLWRFLMQEYVVAALFPDSGE
GFQREAHRKFEAKERVLSFSDISILLRLAQLRRPAGTVILGALNAYDHIVVDEAQDLSSL
ELRTIVAATSPARSITICADEKQQILSFLDSQGFSSVMAQLHSQGLEKENLTVSYRCPKE
IVDLAAQVSGRKVDTSKAHAGVVEFYATKSAAESMAKVRQVVEELVQAAPGSLTGVICKK
KADVKALHAALSGVRGLHPEGEISFSPGVQVIHAHAIKGVEFSNVVLYNPSSYDYRQTDP
DRNLLYVAITRACKTLHIVHHQALAKGLV
NT seq
1890 nt
NT seq
+upstream
nt +downstream
nt
atggaaattgtgcaacaggaagtgaagcggctggatgggattcatgaggcaatagagcgg
tacgcggtcgaccgcctgcggacgatagcgaagcacgaagcatacacgaaggaactggaa
caggagcgtcttaacgcggtggggtggcacgagaagaacgacctcaccgagaagctggtc
gaacacggccaccactccccacgcaaataccttcacgaatacacccaacaggcatcccct
tacttcggcattctcggcatccacgacaacgatcgaaggatcggcaggaaagaatacctg
atcgggaaccagacgctcatggacggccagcgcgtcgccatcgtcgactggagaaaggcc
gagatcaccggtcccttttacgaggggtatgacatcggcgaggaatacgagctcaccatc
agaggggtcgagagggaaggggtgatcacccgcagggacaaggtgaccatcaccaggaag
gccttgaaccggatcgagacacccacggaggtgtacgagctgcgcggcggggagtgggga
aagaacggtgccgcctgcgagtcgagcgctgacaccaaggagcggaccgaggatcaccgc
atggtggactccatcgcggccctcatctccccggaacagttccgggccatcaccaaacag
agggaaggggtggtcgtcataaatggcgcggccggggcggggaagaccaccgtggcgctt
cacaggctttccttcctcatgttcgacgcaccggagaagtaccgccctgagcgctgcatc
gtgctcatgttcaaccgggtgctgcgcgattacgtgaagcagagcagcgacgccttgctt
ggtccggtccgggtggatacctacagcgcctggtcgctgacggcgcttgccgctctgggg
gtccactcgctgaaaacgagcttcgacgatccgttcggcgcgcagaagaaaagcagcatg
atgccggctcttcttgccaagtacgtgaaggagacggcgaagatagaaccggtcaccgac
ctgtggcgtttcctgatgcaggagtacgtcgttgccgcgttgttcccggattcgggcgag
gggttccagcgggaggcccataggaagttcgaagcaaaggagcgggtgctttcgttctcg
gacatcagcatcctgctgcgcctggcgcaactgcggcgacctgccggcaccgtcattctt
ggggcgctgaacgcctacgaccacatcgtggtggatgaggcgcaggacctctcgtcgctc
gaactgcgtaccatcgtggccgctacttcccctgcgcgtagcatcaccatatgcgccgac
gagaaacagcagatcctcagctttctcgattcccaggggttttcgagcgtcatggctcaa
ctccactcgcaggggctggagaaggagaacctcacggtatcttaccgttgccccaaggaa
atcgtcgatctcgccgcccaggtcagcggccggaaggtcgatacttcgaaagcccacgcc
ggcgttgttgagttttacgcgacgaagagtgccgcggagtctatggcgaaggtccggcag
gtggtcgaggagctggtgcaggctgctccgggctctcttaccggggtgatctgtaagaaa
aaagcagatgtcaaagccctgcatgccgcgcttagcggcgtccgcggactgcacccggag
ggggagatttccttctcgcccggcgttcaggtcattcacgctcatgccattaagggggtg
gagttttcgaacgtcgtcctctacaaccccagctcgtacgactatcgccagacggaccct
gacaggaacctgctttacgtggcgattacacgcgcttgcaagaccttgcacatcgttcac
catcaggcattggcgaaggggcttgtgtga
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