Geobacter sp. M21: GM21_3271
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Entry
GM21_3271 CDS
T00933
Name
(GenBank) protein of unknown function UPF0027
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
gem
Geobacter sp. M21
Brite
KEGG Orthology (KO) [BR:
gem00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
gem03016
]
GM21_3271
Enzymes [BR:
gem01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
GM21_3271
Transfer RNA biogenesis [BR:
gem03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
GM21_3271
Prokaryotic type
tRNA splicing ligases
GM21_3271
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
ACT19297
UniProt:
C6E478
LinkDB
All DBs
Position
3802343..3803803
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AA seq
486 aa
AA seq
DB search
MNVPAALKRITDQLWELPVSYKEGMLVPARIFASEKLVREMDAGVFEQVSNVATLPGIQR
YAYCMPDGHWGYGFPIGGVAAMDPGTGVISPGGIGFDINCGMRLVLTNLTADQVIPKLHQ
LVDRLFARIPTGVGCHGFVKLKQDDFRSIVQQGSRWCLKNGFATQEDLDMTEEGGCFSGA
DASHISDKAVERGYNQLGTLGSGNHYCEIQVVKPENVMDAELAAAFGLTMVPNQVVIMFH
CGSRGFGHQVATDYLKLFLSVMGRKYGIKIVDRELACAPFHSPEGQAYFSAMKCAVNMAF
ANRQVILHRIREVFSDLFHASPDELGLRMVYDVAHNTAKLERHEVNGTRKELLVHRKGST
RAFGPGAAGLPGCYAKTGQPVIIGGSMETGSYLLAGMQSGADAFFTTAHGSGRTMSRHEA
KKNFRGDKLQREMEARGIYVRTDSFGGLAEEAGPAYKNIDEVVEATELAGLSKRVARLVP
IGNIKG
NT seq
1461 nt
NT seq
+upstream
nt +downstream
nt
atgaacgtaccggcggcgctaaagcggatcacagatcagttgtgggaactaccggtaagc
tacaaggaagggatgctggtccccgcccgaatctttgcctcagagaaattggtccgggag
atggatgccggcgttttcgagcaggtcagcaacgtcgccacgctccccggcatccagaga
tacgcctactgcatgcccgacggccactggggctacggctttcccatagggggtgtagcc
gccatggatccgggtaccggcgtcatctcgccgggagggatcggtttcgacataaactgc
ggcatgcggctcgtattgacgaacctcaccgccgaccaggtcatccccaaactgcatcaa
ctggtcgatcgtctcttcgcccggatacccaccggcgtcggatgtcatgggttcgtgaag
ctgaagcaggacgattttcgttccatagtgcagcagggttcgcgctggtgcctgaaaaac
ggcttcgctacccaggaagatctggatatgaccgaggaagggggctgcttttccggcgcc
gacgcctcacacataagcgacaaagcggtggaacgcggctacaaccagctcggcacactg
gggtccggcaaccactactgcgagatccaggtggtgaagcctgagaacgtcatggacgcg
gaattggccgcagccttcgggcttaccatggtacccaaccaggtggtgatcatgttccat
tgcggcagcaggggcttcgggcaccaggtggcgacggactacctgaagctgttcctctcc
gtcatggggcgcaagtacggcataaagatcgtcgaccgcgaacttgcctgcgctcctttt
cactcgcccgaaggtcaggcctacttcagcgcgatgaagtgtgccgtcaacatggccttt
gccaacaggcaggtgatcctgcaccggatcagggaggtgttttccgacctgttccacgcc
tcgcccgacgaactcgggctgcgcatggtgtacgacgtggcgcacaacacggcaaagctg
gaacggcacgaggtaaacgggacccggaaggaactcctggtgcaccgcaaaggatccacc
cgcgccttcggccctggcgctgcagggctacccggatgttacgcgaagaccggccagcct
gtcatcataggcgggagcatggagaccggctcctatctgctcgcggggatgcaaagcggc
gccgacgccttcttcaccaccgcccacggcagcggcaggaccatgagcagacatgaggcg
aagaaaaatttcaggggcgacaagctgcagcgtgaaatggaggcgcgggggatctacgtc
cgcaccgactcgttcggcgggttggcggaggaagcgggacccgcatataagaatatagac
gaggtcgttgaagccaccgaactggccggcttgagcaagagggtggcgcgcctggttccg
atcggcaacatcaaggggtag
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