Geobacter sp. M21: GM21_3334
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Entry
GM21_3334 CDS
T00933
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
gem
Geobacter sp. M21
Pathway
gem03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
gem00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
GM21_3334
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gem03021
]
GM21_3334
03400 DNA repair and recombination proteins [BR:
gem03400
]
GM21_3334
Enzymes [BR:
gem01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
GM21_3334
Transcription machinery [BR:
gem03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
GM21_3334
DNA repair and recombination proteins [BR:
gem03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
GM21_3334
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
ACT19359
UniProt:
C6E4R3
LinkDB
All DBs
Position
complement(3856389..3860537)
Genome browser
AA seq
1382 aa
AA seq
DB search
MEDIFNFFDKPKDPLHFSSIKISISSPDKIRERSFGEVKKPETINYRTFKPERDGLFCAK
IFGPTKDYECNCGKYKRMKHRGIVCEKCGVEVIPSKVRRERLGHIDLATPVAHIWFLKSL
PSRIGNLMDITLKDLEKVLYFEAYVVTDPKETGLAFGTVFSEDQYQKALEEYSYGFEAGM
GAAAIRTCLTSMDLDQLSEQLRIEMQEATSEAKRKKTAKRLKVMEAFKNSGNKPEWMILE
CIPVLPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLMELQAPEVIIRNEKRMLQ
EAVDALFDNGRRGRAIAGPNKRPLKSLSDMLKGKSGRFRQNLLGKRVDYSGRSVIVVGPE
LRLHQCGLPKKMALELFKPFIYNKLEERGFVTTIKSAKKMVEKEKPEVWDVLEEVIKEHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCTAFNADFDGDQMAVHLPLSVESQVEA
RVLMMSTNNILSPAHGKPIIVPSQDMVLGIYYMTREKHFALGEGKIFASADEVNIAWDAG
EIHLQARIKVRMKNLVSDEKPTLIETTTGRVLLRDILPDAVPYATINKVMTKKELSNLVD
VCYRLAGNKETVILADKLKAIGFRYAAKAGISISINDMVIPEGKPAIITRATEEVQEIQN
QYTEGLITDGERYNKVIDIWAKSTEDIAKEMLDNLSRDTILDPEGKEVKVPSFNAIHMMA
DSGARGSAQQIRQLAGMRGLMAKPSGEIIETPITANFREGLTVLQYFISTHGARKGLADT
ALKTANSGYLTRRLVDVAQDAIITEADCGTIDGLTVSSLTEGGEVIEHIGDRILGRVALD
DILDPVTGDVLVPANEEIDENLVARIEAAGLEKVKIRSVLTCESRRGICAKCYGRDLARG
HLVNRGEAVGVIAAQSIGEPGTQLTMRTFHIGGTASRRAEQTALEARNEGFAKFININYV
TNSEGHHIVMNRNGELAIVDETGREREKYGVVYGAKIKVSPQEKVTQGQSVAEWDPYTMP
ILTEIAGRVKFGDVIEGVTMEEQVDEVTGLSRKVIIETRDADKRPRITIKDESGKTAKIG
DSLLARYYLPVGSNINVLEDTEVNAGDVIAKIPRETTKTKDITGGLPRVAELFEARKPKD
FAVITEIDGVVAFGKDAKGKRKVLVTPELGEPKEYLIPKGKHISVHEGDHVRAGEALMDG
SSNPHDILRVLGQKELAKYLVDEVQEVYRLQGVKINDKHIETIVRQMLRRVRVKDVGDTN
LLIDDQIERWVFEEENEKAMDKGGRPATAESLLLGITKASLSTESFISAASFQETTKVLT
QASIEGKIDSLRGLKENVIMGRLIPAGTGLALYRNLRMVAEEPVIIPEPVEPEDEEIYEE
EA
NT seq
4149 nt
NT seq
+upstream
nt +downstream
nt
ttggaagacatttttaattttttcgataagccgaaggacccgctccacttctcttccatc
aagatctcgatctcctcgccggacaagatccgcgagcgttccttcggggaagtgaagaaa
ccggaaaccatcaactaccgtaccttcaaaccggagcgcgacggcctcttctgcgccaag
atcttcggaccgaccaaggactacgagtgcaactgcggcaagtacaagcgcatgaagcac
cgcggcatcgtctgcgagaagtgcggcgtcgaggtcatcccctccaaggtgcgccgcgag
cgcctgggtcacatcgacctggccaccccggtggcacacatctggttcctgaagtcgctc
ccgtccaggatcggcaacttgatggacatcaccctgaaggacctcgagaaggtgctctac
ttcgaggcttacgtggtgaccgacccgaaggagaccggccttgccttcggcaccgtcttc
tccgaggaccagtaccagaaggcgctcgaggagtacagctacggcttcgaggccggcatg
ggggctgcggctatccgcacctgcctcacctcgatggacctggaccagctctccgagcag
ctccgcatcgagatgcaggaggcaacctcggaggccaagcgcaaaaagacggccaagcgc
ctcaaggtcatggaggcgttcaagaactcgggcaacaagcctgagtggatgatcctcgag
tgcatcccggtcctgccgccggaactccgcccgctggtccccttggacggcggccgcttc
gctaccagcgacctgaacgacctgtaccgccgcgtcatcaaccgcaacaaccgcttgaaa
cgcctgatggagctgcaggcccctgaggtcatcatcaggaacgagaaacgcatgctgcag
gaggcggtcgacgcgctgttcgacaacggccgccgcggccgcgccatcgccgggcccaac
aagcgtccgctcaagtcgctctccgacatgctcaaggggaagtcgggtcgcttccgtcag
aaccttctcggtaagcgcgtcgactactccggccgttccgtcatcgtcgtcggtccggaa
ctgcgcctgcaccagtgcggtctgccgaagaagatggctctcgagctcttcaagccgttc
atctacaacaagctcgaggagcgcggcttcgtcaccaccatcaagagcgccaagaagatg
gtggagaaggagaagccggaggtctgggacgtgctggaggaggtcatcaaggagcatccg
gttctcttgaaccgcgccccgactctgcacaggctcggcatccaggccttcgaacctgtt
ctgatcgagggtaaagcgatccagctccacccgctggtctgcaccgccttcaacgccgac
ttcgacggcgaccagatggcggtccacctccccctctccgtggagagccaggtggaggcg
cgcgtcctcatgatgtcgaccaacaacatcctgtcgcctgcgcacggcaagccgatcatc
gtcccttcgcaggacatggttctcggcatctactacatgacccgcgagaagcacttcgcc
ctgggcgaagggaaaatcttcgcctccgccgacgaggtcaacatcgcctgggacgctggt
gagatccacctgcaggcgcgcatcaaggtcaggatgaagaacctcgtctccgacgagaag
ccgaccctgatcgagaccaccacaggccgcgtgcttctgcgcgacatcctgccggacgcg
gtgccgtatgcgaccatcaacaaggtcatgaccaagaaggaactctccaacctggtggac
gtctgctaccgtctggccgggaacaaggagacggtcattctcgccgacaagctgaaggcg
atcggtttccgttacgcggcgaaagcgggcatttccatctcgatcaacgacatggtcatc
ccggaaggaaagccggccatcatcacccgcgccaccgaagaggtgcaggagatccagaac
cagtacaccgagggtctcatcaccgacggcgaacgctacaacaaggtcatcgacatctgg
gcgaaatccaccgaggacatcgccaaggagatgctggacaacctctcccgcgacaccatc
ctcgatccggaaggcaaagaagtgaaggtcccctccttcaacgcgatccacatgatggcc
gactcgggcgcaaggggtagcgcgcagcagatccgccagctggcagggatgaggggactc
atggcgaagccttccggcgagatcatcgagaccccgatcaccgcgaacttccgcgagggt
ctcaccgtgctccagtacttcatctccacccacggcgcacgtaagggtctggccgatacc
gcgctcaagacggcgaactccggctacctcacccgccgtctggtcgatgtcgcccaggac
gccatcatcaccgaggcggactgcggcaccatcgacgggcttaccgtctcctccctcacc
gagggtggcgaggtcatcgagcacatcggcgaccgcatcctggggcgcgtggcactggac
gacatcctcgacccggtcaccggcgacgtgctggttccggccaacgaggagatcgacgag
aaccttgtggcaaggatcgaggctgcgggtctggagaaggtcaagatccgttcggtgctc
acctgcgagagccgccgcggcatctgcgccaagtgctacggccgcgacctggcacgcgga
caccttgtgaaccgcggcgaggcggtcggcgtcatcgccgcccagtccatcggcgagccg
ggtacccagctcaccatgcgtaccttccatatcggtggtacggcttccaggcgcgccgag
cagaccgcgttggaggcgaggaacgagggtttcgccaagttcatcaacatcaactacgtc
accaactcggaagggcaccacatcgtcatgaaccgcaacggcgaactcgccatcgtggac
gagaccgggcgcgagcgcgagaagtacggcgtcgtctacggtgcgaagatcaaggtgagc
ccgcaagagaaggtcacccaggggcagtcggtcgccgagtgggacccgtacaccatgccg
atcctcaccgagatcgccggccgggtcaagttcggggacgtcatcgagggtgtcaccatg
gaggagcaggtcgacgaagtcaccggtctctccaggaaggtcatcatcgagacccgcgac
gccgacaagcgcccgcgcatcaccatcaaggacgagagcggcaagaccgcgaagatcggc
gacagccttttggcccgctactacctcccggtaggctccaacatcaacgtgctggaggat
accgaggtgaacgcaggcgacgtgatcgccaagattccgcgtgaaacaaccaagaccaag
gacatcaccggcggtctgccgcgcgtcgccgaactcttcgaggcgcggaagcccaaggac
ttcgcggtcatcaccgagatcgacggcgtggtcgccttcggcaaggacgccaaggggaag
cgcaaggtcctggtcaccccggaactcggcgagccgaaggaatacttgatccccaaaggg
aagcacataagcgtccacgaaggggaccatgtccgcgccggcgaggcgctcatggacggc
tcttccaatccgcacgacatcctgcgcgtcctgggccagaaagaactggccaagtatctg
gtcgacgaggtccaggaggtgtatcgactccagggcgtcaagatcaacgacaagcacatc
gagaccatcgtacgtcagatgctgcgccgcgtcagggtcaaggatgtgggcgataccaat
ctgctcatcgacgatcagatcgagcgctgggtctttgaggaagaaaacgaaaaggcgatg
gacaaaggcgggcgtcctgcaaccgctgagtcattgctccttggcataaccaaggcgtcg
ctctctactgagtcatttatttctgctgcttccttccaggagacaacaaaagtattgaca
caggcgtcgattgaaggtaagatcgatagtcttcgcggtctcaaagagaacgtgattatg
ggccgcttgatcccggcgggaacgggattggctctttaccgcaacctacgcatggttgct
gaggagccagtaatcattccggagccagttgaaccggaagatgaagaaatctacgaagaa
gaagcctag
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