Geobacter sp. M21: GM21_3785
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Entry
GM21_3785 CDS
T00933
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
gem
Geobacter sp. M21
Pathway
gem03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gem00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GM21_3785
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gem03019
]
GM21_3785
03400 DNA repair and recombination proteins [BR:
gem03400
]
GM21_3785
Enzymes [BR:
gem01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
GM21_3785
Messenger RNA biogenesis [BR:
gem03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
GM21_3785
DNA repair and recombination proteins [BR:
gem03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
GM21_3785
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
Motif
Other DBs
NCBI-ProteinID:
ACT19804
UniProt:
C6E7E4
LinkDB
All DBs
Position
complement(4358282..4360081)
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AA seq
599 aa
AA seq
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MPASPIQILNDVFGFKSFRSPQHEIVETVLSGRDAFVLMPTGGGKSLCYQIPALCFPGTA
LVVSPLISLMKDQVDALRENGISAACYNSALGEAEARRVLAQLHAGELKLLYVAPERLLS
DGFLERIKPLSISLFAIDEAHCVSQWGHDFRPEYAQLGVLREIFPEIPMIALTATADAQT
RGDILSRLGLQGATCYCAGFDRPNIRYSVIDKNKPFNQLTGFLSSRKDEAGIVYALSRKR
VEEVARKLCAAGIKAAAYHAGLPDKERHRVQEAFLKDDIKIVVATVAFGMGIDKSNVRFV
VHYDMPKSIESYYQETGRAGRDGLPADALLLFGYGDVAVARGLIGNGGNAEQNRIELHKL
NCMTGFAEAQTCRRRVLLGYFGDRLEQDCGNCDICESPPERFDATEDAQKALSCVYRVGQ
RFGMGHVIDVLRGSQNHRIQELKHDQLSTFGIGKQHSQEFWGNLLRQLIHLGYLEQDLAN
FSVLKLTEGARPLLRGEVRLELAKPRDTKVVEKKSAAKKPSYDGVLFQELRELRKGIADE
QQVPPFVVFADATLAEMAAQMPKDKWELLKITGVGQHKMARYGDAFLRVIREHLEKAEN
NT seq
1800 nt
NT seq
+upstream
nt +downstream
nt
atgcctgcatcccccatacagattctcaacgacgtgttcggcttcaagtcgttccggtcg
ccgcagcatgagatcgtggaaacggttctctccggcagggacgccttcgtcctcatgccg
accggcggcggcaaatcgctctgctaccagatcccggccctctgctttcccggcacagcc
ttggtggtctcccccctcatctcgctgatgaaggaccaggtcgacgccctgcgcgagaac
ggcatctccgccgcgtgctacaactctgcgctgggagaggcggaggcgcgccgggtgctg
gcccaactgcacgcaggcgagctgaagctcctctacgtcgcgcccgagcggcttttgagc
gacggcttcctggaaaggatcaagccgctttccatctccctcttcgccatcgacgaggcg
cactgcgtctcgcagtgggggcacgacttccgtcccgagtacgcccagcttggcgtcttg
cgcgagatattccccgagataccgatgatcgcgcttaccgcgacggccgacgcccagacc
cggggagacatactttcccggctcgggcttcagggggctacctgctactgcgccggtttc
gatcgccccaacatccgttacagcgtcatcgacaagaataagcccttcaaccagctcacc
ggcttcttgtcgagccgcaaggacgaggcggggatagtgtatgccctgtcccggaagcgg
gtggaggaggtggccaggaagctttgcgcagccgggatcaaggcggccgcctatcacgcc
ggcctccccgataaggagcggcaccgggtccaggaggccttcctcaaggacgacatcaag
atcgtggtggcgacggtcgccttcggcatggggatagacaagtccaacgtccgcttcgtg
gtgcactacgacatgcccaagagcatcgagagctactatcaggagaccgggcgtgccggc
cgggacgggcttcccgcagacgcgctcctcttgttcggttacggcgacgtagccgtggcc
cgcggactcatcggcaacggcggcaacgcggagcaaaacaggatcgagctgcacaagctc
aactgcatgaccgggttcgccgaggcccagacctgccggcgccgggtgctgctcggatat
ttcggggaccggctggagcaggactgcggcaactgcgacatctgcgagagcccgcccgag
cgcttcgacgccaccgaggatgcccagaaggccctctcctgcgtctaccgagtcgggcag
cggttcgggatggggcacgtcatcgacgttttgcgcggttcgcagaaccaccggatccag
gagctgaaacacgaccagctttccaccttcggcatcggaaagcaacactcccaggagttc
tggggcaacctgctgcgccaattgatccacctggggtatctggagcaggacctggcgaat
ttctcggtcttgaagctgaccgagggggcgcgcccgcttttgaggggggaggttcggttg
gagctagccaagccgcgcgacaccaaggtggtggagaagaagtcggccgccaaaaagccg
agttacgacggcgtgctgttccaggagctgcgtgagctaaggaaggggatcgcggacgag
cagcaggtgccgcccttcgtggtgttcgccgacgccacgctcgccgagatggcggcacag
atgcccaaggacaagtgggagttgctgaagataaccggggtggggcagcacaagatggcc
cgctacggagacgccttcctgcgggtgatcagggaacatctggaaaaggcggagaactga
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