Geobacter sp. M21: GM21_4133
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Entry
GM21_4133 CDS
T00933
Name
(GenBank) DEAD_2 domain protein
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
gem
Geobacter sp. M21
Pathway
gem03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
gem00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
GM21_4133
09124 Replication and repair
03420 Nucleotide excision repair
GM21_4133
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gem03021
]
GM21_4133
03036 Chromosome and associated proteins [BR:
gem03036
]
GM21_4133
03400 DNA repair and recombination proteins [BR:
gem03400
]
GM21_4133
Enzymes [BR:
gem01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
GM21_4133
Transcription machinery [BR:
gem03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
GM21_4133
Chromosome and associated proteins [BR:
gem03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
GM21_4133
DNA repair and recombination proteins [BR:
gem03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
GM21_4133
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C_2
DEAD_2
DEAD
ResIII
HBB
ATPase
Helicase_C
Motif
Other DBs
NCBI-ProteinID:
ACT20148
UniProt:
C6E9P8
LinkDB
All DBs
Position
complement(4724809..4727205)
Genome browser
AA seq
798 aa
AA seq
DB search
MKPAPNLINIPVGYFALPVPRTGSIEPRSGYDRSTAEGREIHLRIQKKRAQADSSYQAEV
PVSRVFERGGYQFQVSGRLDGVFRHAPPLIEEIKSCFNLWELRRRLAHAGTDEPYSLQLL
TYGYFHWLEHGVIPRLSFHLVSSRNGASEDLPVRLDLEAYRVWLELRLDELAREADEASK
RARRRRKAAKEFPFPFAAPRPGQLELMGEIESGMVEGRAMLIQAPTGLGKTAGVLHPVLK
EALGRGQTVCYVTPKNSQHEVAEDAMKRFRQSGVRLRSLTVTAKGRICFMNEPVCTPDYC
EYARDYYGKLARHGVVELMAGKRKLKERTFRDFGEKYQLCPFELQIEAVPLADVVICDYN
YVFAPRSALGRAAALAVEQSGKPNLVIDEAHNLPSRAMDYYSPRLSSALLDGMRGDLAEI
PNPFRRDALELLDECLAAVASCGGSGKGMRPVKIEPPLAPFLELDGRLRALLSRYLEADV
EIRQKDPVLKLSHYWGEFAEILEFATASKRREFFTSYEPHSGGGSVKITCCDASALIADR
YGEYQQVVAFSATLKPFDYYAKLSGLDPEQVRCAEFQSPFPSSLRKLMIIPQISTRYSQR
ERNYGRIADALARVVALKSGNYLAFFPSFVFLERVAELFRAPEGFEVLLQERKMSGARVT
EILERLRAGNAPTLVFAVQGGSLSEGVDYAGDMVIGAFVVGPPLPNFDLEREEMRGYYQR
HYGNGYQYAYTIPAMAKAIQAAGRVIRSETDRGLIVLMDDRFLREEYSSAMPGDWFESGA
SELVSEAILSDIREFWGR
NT seq
2397 nt
NT seq
+upstream
nt +downstream
nt
atgaagcctgcacctaatctcatcaacatcccggtagggtatttcgcccttcccgttccc
cgcaccgggagcatcgagccccgttccggctacgaccgctccaccgcggaggggcgcgaa
attcaccttaggatccagaaaaagcgcgcgcaggcggacagcagctaccaggccgaagtg
ccggtcagccgcgtcttcgaaaggggagggtaccagttccaggtgagcggccgcctggac
ggggtcttccgccacgccccccccttgatcgaggagatcaagagctgcttcaacctgtgg
gagctcaggcgccggttggctcacgccggcacggacgagccttattcgctgcagcttctc
acctacggctacttccattggctggagcacggcgtgataccgcgcctctccttccacctc
gtgtcctcccgcaacggcgcctccgaggatctcccggtgcgactggacctggaggcgtac
cgggtctggctggagctgcgcctggacgagctggcgcgggaggcggacgaggcctcgaag
cgcgcccgaagaaggaggaaggcggcaaaggagttcccttttcccttcgccgccccccgc
cccgggcagcttgagctgatgggggagatagagtccggcatggtggaggggcgtgccatg
ctgatccaggcgccgaccgggctgggaaagaccgcgggggtcctgcacccggtgctgaag
gaggcgctcgggcgcggccagacggtctgctacgtgacgccgaaaaacagtcagcacgag
gtggcggaggacgccatgaagcgttttcggcagtcgggggtgcggctgcgttcgctcacc
gtgaccgcgaagggcaggatctgtttcatgaacgaacctgtctgcacgccggactactgc
gagtacgcgcgcgattactacggaaagctcgcccggcacggcgtagtcgagctgatggcc
gggaaaaggaaactgaaggagcggactttccgcgatttcggggagaagtaccagctttgc
cccttcgagttgcagatcgaagcggtgccgctggccgacgtcgtcatctgcgactacaac
tacgtcttcgcccccaggtccgcgctggggcgggccgcggcactcgccgtggagcagagc
gggaagccgaacctggtgatagacgaggcgcataacctcccctcccgcgccatggattac
tactcccccaggctttccagcgcgcttttggatgggatgcggggcgatctggcggaaatt
cccaacccatttcggcgcgacgcactggagcttttggatgaatgcctggcggcggtggcg
tcctgcggcggcagcggaaaagggatgcgcccggtaaagatagagccccccctggcccct
ttcctggagctggacgggaggctgcgcgccctgctgtcgcgctacctggaggcggatgtg
gagatcaggcaaaaggacccggtcttgaagctctcccattactggggggagttcgccgag
atcctggagttcgccacagcctcgaagcggcgggagtttttcacctcctatgagcctcat
tccggcggagggagcgtcaagataacctgctgcgacgcctccgccctcattgcggaccgg
tacggggagtaccagcaggtggtggcgttctcggcgaccctgaagccgttcgattactac
gcgaagctttccgggctcgacccggaacaggtgcgctgcgccgagttccagagccccttt
cccagcagcctgcgcaagctgatgatcatcccgcagatctcgaccagatactcccagcgc
gaacgcaattacggccggatcgccgatgccctggcccgggtagtggcgctgaaaagcgga
aactacctggcatttttcccgagtttcgttttccttgagcgggtggcggagctctttcgg
gcgccggaagggttcgaggtgctgctccaggagaggaagatgagcggggcgagggtgacc
gagatcctggagcggctgcgcgccgggaacgccccgacccttgtcttcgccgtgcaggga
ggctccctttccgaaggggtggattacgcgggggacatggtgataggcgccttcgtggta
ggtcccccccttcccaacttcgacctggagcgggaggagatgagggggtactaccagcgc
cattacggcaacggctaccagtacgcctacaccattccggccatggccaaggcgatccag
gcggcggggcgggtgatccgctcggaaacggaccgcggcctgatcgtcttgatggacgac
cgtttcctgcgagaggagtacagctcagccatgcctggggattggttcgagtccggggcc
agcgagctggtctcggaggccatattgagcgatatcagggagttttggggacggtga
DBGET
integrated database retrieval system
