Geobacter sp. M21: GM21_4145
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Entry
GM21_4145 CDS
T00933
Name
(GenBank) diaminopimelate decarboxylase
KO
K01586
diaminopimelate decarboxylase [EC:
4.1.1.20
]
Organism
gem
Geobacter sp. M21
Pathway
gem00300
Lysine biosynthesis
gem00470
D-Amino acid metabolism
gem01100
Metabolic pathways
gem01110
Biosynthesis of secondary metabolites
gem01120
Microbial metabolism in diverse environments
gem01230
Biosynthesis of amino acids
Module
gem_M00527
Lysine biosynthesis, DAP aminotransferase pathway, aspartate => lysine
Brite
KEGG Orthology (KO) [BR:
gem00001
]
09100 Metabolism
09105 Amino acid metabolism
00300 Lysine biosynthesis
GM21_4145
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
GM21_4145
Enzymes [BR:
gem01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.1 Carboxy-lyases
4.1.1.20 diaminopimelate decarboxylase
GM21_4145
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Orn_Arg_deC_N
Orn_DAP_Arg_deC
Ala_racemase_N
AtzH-like
Motif
Other DBs
NCBI-ProteinID:
ACT20160
UniProt:
C6E9R0
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All DBs
Position
complement(4737262..4738515)
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AA seq
417 aa
AA seq
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MHHFQYKGEELFAEDVAIKDIVAAVGSPVYIYSKATLERHYKAMDDAFAQAPHTICYSVK
ANSNLAVLKTFVNLGGGVDIVSGGELYRALAAGVDPKKVVYSGVGKRDEEIAYALESGIL
MFNIESEQELDRISEVAGRIGRKAGIAIRVNPDVDPQTHPYITTGLKKAKFGINIERALE
QYQRAKGLADIEILGIDCHIGSQLTKVSPFVDAIKKLKRLLEGVRGMGIDVRYLDLGGGL
GIQYDDEAPPLPADYGSSIQEETKDLGLHLIFEPGRNLVGNAGILVGKCLYTKKGEEKNF
VIVDAGMNDLARPALYGSFHGVRPVLRNQDGVIEGDIVGPICESGDFLVKEREIPNFRQG
DLIAFMSAGAYGFTMSSNYNSRPRAAEVMVDGDKFEVVRDREKLEDLIRGERVPSFL
NT seq
1254 nt
NT seq
+upstream
nt +downstream
nt
atgcatcatttccaatataaaggtgaagagctgttcgcggaagacgtggcgataaaggat
attgtcgccgccgtcggtagcccggtctatatctactcgaaagcgacgctggaaagacat
tacaaggccatggacgatgccttcgcccaggcaccccataccatctgctactcagtcaag
gccaactccaacctcgcggtgctgaagaccttcgtcaacctggggggcggggtcgacatc
gtctccggcggagagctttaccgcgcgctcgccgcgggggtggacccgaagaaagtcgtt
tactccggcgtgggcaaaagggacgaggagatcgcctacgcgctggagagcgggatcctg
atgttcaacatagagtccgagcaggaactggaccgcatcagcgaagtcgccggccgcatc
ggccggaaggcggggatcgccatccgcgtgaacccggacgtcgaccctcaaacccatccg
tacatcaccacgggcctgaagaaggcaaagttcggcataaacatagagcgcgccctggag
cagtaccagcgcgccaaggggctcgccgacatagagatcctggggatagactgccatatc
ggcagccagctcaccaaggtctctcccttcgtcgacgccatcaagaagctgaaaaggctc
ctggaaggcgtgaggggaatgggaatcgacgtcagatatctcgacctcggtggcggcctc
ggcatccagtacgacgacgaagcgcccccgctgcctgcggattacggctcctccatccag
gaagagaccaaggacctcgggctgcacctaattttcgagccagggaggaacctagtaggc
aatgccggcattttggtcggcaaatgcctctacactaaaaaaggcgaggaaaaaaatttc
gtcatcgtggatgccggcatgaacgatctggcccggccggctctctacggttccttccac
ggcgtcaggccggttttaaggaaccaggacggcgtgatcgaaggcgatatcgtcggtccc
atctgcgagtcgggcgatttcctggtcaaagaacgcgagatcccgaacttccgtcagggc
gacctgattgcgttcatgtcggccggcgcctacggcttcaccatgagcagcaattacaac
agccggccccgcgccgccgaagtgatggtcgacggggacaagttcgaagtggtgcgagat
cgggagaagctggaggacctgatccggggcgagcgagtcccgtcctttctttaa
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