Geminocystis sp. NIES-3709: GM3709_1172
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Entry
GM3709_1172 CDS
T04142
Name
(GenBank) RNA-2',3'-PO4:RNA-5'-OH ligase
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
gen
Geminocystis sp. NIES-3709
Brite
KEGG Orthology (KO) [BR:
gen00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
gen03016
]
GM3709_1172
Enzymes [BR:
gen01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
GM3709_1172
Transfer RNA biogenesis [BR:
gen03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
GM3709_1172
Prokaryotic type
tRNA splicing ligases
GM3709_1172
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF4514
Motif
Other DBs
NCBI-ProteinID:
BAQ64407
LinkDB
All DBs
Position
complement(1331663..1332844)
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AA seq
393 aa
AA seq
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MPYEQLNLSTPKPILSWANHELGFQETHMAKNVASLPFVYKHVALMPDVHLGKGALVGSV
IATKDAIIPAAVGVDIGCGMSAIKTPFIADQLEGKLKKIRSEIEANIPVGFNENKNTETK
VTNWQGWQDFKNLHSGVQRLEGKAIKQLGSLGGGNHFIELCLDTEGQVWLMLHSGSRHIG
NQLADCHIKTGKQLAKLANLRLPDPDLAYFVGGTPEFDAYWRDLQWAQNYARFNRDVMMS
RFKAIVEKHLNGGKSTKSLLTVNCHHNYAEKETHFGEDVYVTRKGAVRAMENDYGIIPGS
MGAKSFIVKGKGNHESFCSCSHGAGRKMSRSKAKKSFDVYDLITQTEGIECRKDQGVIDE
IPCAYKSIEEVMNQQTDLVEVVATLKQLICIKG
NT seq
1182 nt
NT seq
+upstream
nt +downstream
nt
atgccgtacgaacaattaaacctttctactcctaaaccgatactatcatgggcaaatcat
gaactaggctttcaagaaactcacatggcaaaaaatgtggcttctttaccctttgtttat
aaacacgttgccttaatgcctgatgtacacttaggaaaaggtgcattagtcggctcagtt
atagcgacgaaggatgcgattattcctgcggctgtcggagtagatattggctgtggtatg
agtgcaatcaaaacaccatttatagcagatcagctagaagggaaattaaaaaaaattcga
tcggaaattgaagcaaatatacccgttggctttaacgaaaataaaaatacagaaaccaaa
gttactaactggcaaggttggcaagactttaaaaatttacattcaggagtacaaagatta
gaaggtaaagctattaaacaacttggctcgttaggtggaggtaatcactttattgaacta
tgtttagatacagaaggacaagtatggttaatgctacattcaggctctcgtcatattggc
aatcaattggcagactgtcatatcaaaaccggaaaacagttggcaaaattagctaattta
agactacctgatccagatttagcttattttgtgggtggcactcctgaatttgacgcttat
tggcgagatttgcaatgggcacaaaattatgctcgttttaatcgagatgtcatgatgagt
cgttttaaagccatcgtcgaaaaacatttgaatggtggtaaatcaacaaaatctttatta
acagttaattgtcatcataattatgcagaaaaagaaacccattttggcgaggatgtttat
gtaactcgtaaaggtgctgtaagagccatggaaaatgattatggcattattccgggatca
atgggagcaaaatcttttattgttaagggtaaaggtaatcatgaaagtttctgtagttgt
agtcatggtgcaggacgaaagatgtctcgtagtaaggcaaaaaaaagttttgatgtttat
gatttaattacccaaacagaaggaattgagtgtcgcaaagatcaaggtgttatcgatgaa
attccctgtgcttacaaatcgatcgaagaagtaatgaatcaacaaactgatttagtggaa
gtggtagcaactttaaaacagcttatttgtattaaaggatag
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