Geminocystis sp. NIES-3709: GM3709_1318
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Entry
GM3709_1318 CDS
T04142
Name
(GenBank) DEAD-box ATP-dependent RNA helicase CshA
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
gen
Geminocystis sp. NIES-3709
Pathway
gen03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gen00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GM3709_1318
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gen03019
]
GM3709_1318
03009 Ribosome biogenesis [BR:
gen03009
]
GM3709_1318
Enzymes [BR:
gen01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
GM3709_1318
Messenger RNA biogenesis [BR:
gen03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
GM3709_1318
Ribosome biogenesis [BR:
gen03009
]
Prokaryotic type
rRNA helicases
GM3709_1318
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Flavi_DEAD
AAA_19
HEM4
Helicase_C_2
Fe-ADH
Motif
Other DBs
NCBI-ProteinID:
BAQ64553
UniProt:
A0A0D6ANW6
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All DBs
Position
1484413..1485900
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AA seq
495 aa
AA seq
DB search
MTTSFASLGLSESLVAQVENLGFSTPTKIQTLAIPELILGRDVVGQSQTGTGKTAAYSLP
ILDRIDRNAKEVQALILAPTRELAQQVAEALKDLIGKERIYVLTVYGGQSMERQIRFLEK
GAHIVVGTPGRIIDLLHRKHLKLDSLKYVVLDEADEMLSMGFIDDVKQILATTPEGRQTT
CFSATMPREIKQLVNEFMRDPVSITGEKPQDTPSRIDQVVYMVPRGWSKVKAIQPILEIE
DPQTAIIFVRTKRTASEVTAKLQEAGQSVDEYHGDLSQQQRERLIQRWREGKVKVVVATD
IAARGLDVSDLTHVFNYDLPDNSETYIHRIGRTGRAGKEGKAIALVEPSDRRLLRQIERR
VNQTIRIEQIPNRSTVEAKRMQKLTEQIKESLAGERLASFLPLIKELHGEYEPSAIAAAT
LQILYDANCPAWLQQDWEVPTESSLKPNIGGKGKPSSAGRKYGSRGSGSYERKQSYSATG
GGKPKRNFDRPVKVR
NT seq
1488 nt
NT seq
+upstream
nt +downstream
nt
atgacaacttctttcgcaagtttaggactttcagaatctctcgttgctcaagtagaaaat
cttggtttttctactcccacaaagattcaaactttagctatccctgaattaattttaggt
cgtgatgttgtgggacaatcacaaactggtactggtaaaactgctgcctattctctacca
atcctcgatcgcattgatcgtaatgctaaagaggttcaagccttaattttagcccctact
agagaattagctcaacaggtagcagaagcacttaaagatttgattggtaaagaacgtatt
tatgttttaaccgtttacggtgggcaatctatggagcgtcaaattcgctttttagaaaaa
ggtgctcatattgtagtcggtactcccggacgtattattgatttattacatcgcaaacat
ttaaagttagattctttaaaatatgtggtacttgatgaagctgacgaaatgttaagcatg
ggcttcattgatgatgttaagcaaattttagcaactacccccgaaggtcgtcaaaccact
tgtttttcagctactatgcctcgagagattaagcaattagtcaacgagttcatgagagat
cctgtaagcattacaggagaaaaaccccaagatactccttcccgtatagatcaggtcgtt
tatatggtgcctcgtggttggtcaaaagtaaaggcgattcaacctattttagaaatagaa
gatccccaaacagcaattatttttgtacgcacaaaacgtactgcttctgaggtaacagca
aagttacaagaagctggtcaaagtgttgacgaatatcatggtgacttaagccaacaacaa
cgggaacgtttaattcagcgttggcgtgaaggtaaagttaaagtggtagtggctacggat
attgcggcacgaggtttggatgtttctgatttaacccacgttttcaattacgatttacct
gataatagtgagacttatattcaccgtatcgggcgtacaggaagagctggaaaagagggt
aaagctattgctttagttgaaccgagcgatcgccgtttattacgtcaaatagagcgtcgt
gtgaatcaaaccatccgaattgagcaaatccccaatcgttcaacagttgaagccaaacgg
atgcaaaaactcacggaacaaattaaggaatctcttgctggtgaaaggttagcttctttc
ttacctttaattaaagagttacatggtgagtatgagcctagtgcgatcgctgcagcaact
ttacaaattttatatgatgccaattgccctgcatggttacaacaagattgggaagtacct
accgaatcatctttgaaacctaatattggtggtaaaggtaagccttcttctgctggacgt
aaatatggtagtcgtggcagtggtagttatgaacgtaaacaaagctacagtgctactggt
ggtggaaaacccaaacgtaacttcgatcgacctgtaaaagtgagataa
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