Geminocystis sp. NIES-3709: GM3709_1557
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Entry
GM3709_1557 CDS
T04142
Name
(GenBank) DNA polymerase III beta subunit
KO
K02338
DNA polymerase III subunit beta [EC:
2.7.7.7
]
Organism
gen
Geminocystis sp. NIES-3709
Pathway
gen03030
DNA replication
gen03430
Mismatch repair
gen03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
gen00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
GM3709_1557
03430 Mismatch repair
GM3709_1557
03440 Homologous recombination
GM3709_1557
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
gen03032
]
GM3709_1557
03400 DNA repair and recombination proteins [BR:
gen03400
]
GM3709_1557
Enzymes [BR:
gen01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
GM3709_1557
DNA replication proteins [BR:
gen03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
GM3709_1557
DNA repair and recombination proteins [BR:
gen03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
GM3709_1557
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_beta
DNA_pol3_beta_3
DNA_pol3_beta_2
DUF4923
DUF4097
TbpB_B_D
Motif
Other DBs
NCBI-ProteinID:
BAQ64792
UniProt:
A0A0D6APK9
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All DBs
Position
1728393..1729568
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AA seq
391 aa
AA seq
DB search
MKIVCSQVDLKNNLSLVSRAVPSRPTHPILGNILLVADEDKNRITLTGFDLSLGMRTSFA
SEVEEGGMITLPSKLLNDIIARLPEGEITLSYDEDELDENPLVAIDSLSGKFQLRGVKGD
EFPELPIVEKEEAFFLPITALIEGLKGSLFSASSDETKQILTGVHLTRELDSLEFAATDG
HRLAVVKTTAEKQEDETEETDSPLTEEQNFNITIPARALRELEKIISGEKDNESVALYVD
QGQVVFELGDQHLTSRKLEGAYPNYGQLIPKSFERTMIVDRKQVIDSLERVSVFADQKNN
MVKFNLDHNSNELTLSVEAKELGNAKASLSAEITGEGFDIGFNIRYLMDGLKALSANDIK
FQLNGATQPVIITPLSGLQMTYLIMPVQIRE
NT seq
1176 nt
NT seq
+upstream
nt +downstream
nt
gtgaaaatagtttgttctcaagtagatcttaaaaataatttatcattagttagtcgtgcc
gttccctctcgtcctacccatcccattttaggtaatatcttgttagtagcggatgaagac
aaaaacagaattactctcactgggtttgatttaagtttaggaatgcgtaccagttttgcc
tcggaagtagaagaagggggtatgattactttaccttctaagttattaaatgatattatt
gctcgtttaccagaaggggagattactttatcttatgatgaggatgaattagatgaaaat
cctctagttgcgatcgactctttatctggtaaatttcaattaagaggagtaaagggagac
gagtttcctgagttgccgatagtcgagaaagaggaagcctttttcttacccattactgcg
ttgattgaggggttaaaaggttctttattttctgctagtagtgacgaaaccaagcaaata
ttaacaggggttcatcttaccagagagttagacagtttggaatttgcggccacggatggc
caccgtttagctgttgttaaaaccactgctgaaaaacaagaagatgaaaccgaggaaact
gattcacctttaacggaagaacagaattttaatattactatacctgctagagcattaagg
gagttagagaagattatttctggtgagaaagacaatgaatctgttgctttgtatgtagat
caaggacaagttgtttttgagttgggggatcaacatcttactagcagaaagttggagggt
gcttaccctaattatggtcaattaattcctaaaagttttgaaagaacaatgattgtcgat
cgaaaacaagtaattgatagtttagagagggtttcggtttttgcagatcaaaaaaataat
atggttaagtttaatttagatcataatagtaatgaactaactttatcggtggaggctaaa
gagttaggcaatgcaaaagcatctttgtcggcagaaataacgggagaaggctttgatatt
ggttttaatattcgctatttaatggatgggttaaaagcattatcagctaacgatattaag
tttcagttgaatggggcaactcaaccagtgattatcactcctcttagtggtttacaaatg
acttatttaattatgcctgttcaaatacgggaataa
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