Geminocystis sp. NIES-3709: GM3709_1727
Help
Entry
GM3709_1727 CDS
T04142
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
gen
Geminocystis sp. NIES-3709
Pathway
gen03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gen00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GM3709_1727
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gen03019
]
GM3709_1727
03016 Transfer RNA biogenesis [BR:
gen03016
]
GM3709_1727
Enzymes [BR:
gen01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
GM3709_1727
Messenger RNA biogenesis [BR:
gen03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
GM3709_1727
Transfer RNA biogenesis [BR:
gen03016
]
Prokaryotic type
tRNA degradation factors
GM3709_1727
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
KH-I_KHDC4-BBP
KH_2
EXOSC1
Phage_connect_2
KH_KhpA-B
CsrA
Motif
Other DBs
NCBI-ProteinID:
BAQ64962
UniProt:
A0A0D6AQ17
LinkDB
All DBs
Position
complement(1925020..1927173)
Genome browser
AA seq
717 aa
AA seq
DB search
MEEYNKSISFFEGRDIKIKVGLLAPQAGGTVLIQAGETAVLVTATRTKGREGIDFLPLTV
DYEERLYAAGRIPGGFLRREGRPPERATLTSRLIDRPLRPLFPSWLRDDLQIVATTLSMD
EEVPPDVLAVTGASIATLVAQIPFYGPMAAVRVGLVHDEFIINPTFREIENGDLDLVVAG
TPDGIVMVEAGANQLPEQDIIEAIEFGYEAILELIQAQKDLIQELGIEIKIENKEEDNPA
VVNFIHEKASEEIKQILCHFDYDKNARDEALDTIQASVQEAINALGDEDEIKIAIAENSK
LLPNLFKQLTKKLMRRQIIEDGVRVDGRKLDQVRPISSRVGLLPARVHGSGLFQRGLTQV
LSIATLGTSGDAQDLADDLHPDFEKRYLHHYNFPPYSVGETKPLRPPGRREIGHGALAER
AITPVLPPQEDFPYVIRVVSEVLSSNGSTSMGSVCGSTLALMDAGVPITKPVSGAAMGLI
KEGDEVRILTDIQGIEDFLGDMDFKVAGTDSGITALQMDMKITGLRMETISEAVKQAREA
RLHILGEMMKTINTPRTELSPYAPRLMTMKIDPDMIGLVIGPGGKTIKGITEQTGSKIDI
ADDGTVTICAVQAERAQQAKRIIQTMTRKLNEGDVYLGRVTRVIDIGAFVEVLPGKEGMI
HISQLAEHRVGKVEDEVTIGDEIVVKIRGFDQKGRLNLTRLGIHPEQAAIARQESQI
NT seq
2154 nt
NT seq
+upstream
nt +downstream
nt
atggaagaatataataagtcaatttctttttttgaaggaagagatataaaaattaaagtc
ggattattagcacctcaagcgggaggaacggttttaattcaagcaggtgaaaccgcagtt
ttggtaacggcaactcgtactaaaggcagagaaggtattgattttctacctctgactgtg
gattatgaagaaagattgtatgcggccggacgtattccgggtggatttttacgtcgtgaa
ggaagacctccagaacgagcaactctcacaagtcgcttaatcgatcgacctttgcgtcct
ctttttccatcatggttgagagatgatctacaaattgtcgctactactctatctatggat
gaggaagtaccccccgatgtgttagctgttactggagcttcgatcgcaactttagtggct
caaattcccttctatggtcccatggcggccgtaagagttggattagttcatgatgaattt
attattaaccctacttttcgagaaatcgaaaacggcgatcttgatttagttgttgctgga
actcctgatggtattgtcatggtggaagctggggcgaatcagttaccagaacaagatatt
attgaggcgatcgaatttggctatgaggcaattttagaattaattcaagctcaaaaagat
ctcatccaagagttaggtattgaaatcaaaatcgaaaataaagaagaagataaccctgct
gtagttaattttattcacgaaaaagctagtgaggaaattaaacagattctatgtcatttt
gactacgataaaaatgctagagatgaagccttagacactattcaagctagtgtacaagaa
gccattaacgctttgggggatgaagatgaaattaaaatcgctatagctgaaaattctaaa
cttcttccgaacctatttaaacagttaaccaaaaaactgatgcgccgtcaaattattgaa
gatggtgtgagggttgatggacggaaattagatcaggtacggcctatttcttcccgtgtt
ggtttattacctgccagagttcacggtagcggtttatttcaacggggtttaactcaagta
ctttcgatcgcaactctaggcacatcaggagacgctcaagatttagcggatgacttacat
cctgactttgaaaaacgttaccttcatcactataattttcctccttattccgtaggggaa
actaaacccttacgcccccccggaagacgagaaattggtcatggtgctttagctgaaaga
gctataactcctgttttaccacctcaagaagactttccttatgtaatcagagtagtttct
gaagtattgtcttccaacggttcaacttctatgggttcggtatgcggttcaaccttagcc
ttaatggatgctggagttcccattactaagcctgtgagtggtgccgctatgggattaatt
aaagaaggggatgaagtgcgtatcttaaccgatattcagggtatcgaagactttttaggg
gatatggattttaaagtagctggtactgatagcggtattactgctttacaaatggatatg
aaaattacgggtttaagaatggaaaccatctctgaggcagtaaaacaagccagagaagcc
cgtttacatatcttaggagaaatgatgaaaaccattaatactccccgtacagaattgtca
ccctatgcacctcgtttaatgaccatgaaaatcgatcctgatatgattggtttagttatt
ggaccaggtggtaagacgatcaaaggtattactgaacaaactggttcaaaaatcgatatt
gctgacgatggtactgttactatttgtgctgtacaagctgaaagagcccaacaagccaaa
cgcatcattcaaaccatgactcgtaaacttaacgagggagatgtgtatttagggcgtgta
actcgtgttatcgatattggtgcatttgtggaagttttacccggcaaagaaggtatgatt
catatttctcaattagcagaacatcgtgtaggtaaagtagaagatgaagttactattggg
gatgaaattgtggtcaaaattcgtggttttgatcaaaaaggacgtttgaatttaactcgt
ttaggtatccaccctgaacaagcggcgatcgcccgtcaagaatctcagatttag
DBGET
integrated database retrieval system
