Geminocystis sp. NIES-3709: GM3709_1972
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Entry
GM3709_1972 CDS
T04142
Name
(GenBank) cyanobacterial SigF-related sigma factor
KO
K03090
RNA polymerase sigma-B factor
Organism
gen
Geminocystis sp. NIES-3709
Brite
KEGG Orthology (KO) [BR:
gen00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gen03021
]
GM3709_1972
Transcription machinery [BR:
gen03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
GM3709_1972
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4
Sigma70_r4_2
Sigma70_r3
HTH_24
Sigma70_ECF
HTH_3
HTH_23
HTH_17
HTH_28
HTH_Crp_2
KORA
HTH_AsnC-type
HTH_11
GerE
HTH_8
HTH_Tnp_ISL3
HTH_30
DUF134
Motif
Other DBs
NCBI-ProteinID:
BAQ65207
UniProt:
A0A0D6AQT3
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All DBs
Position
complement(2226917..2227690)
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AA seq
257 aa
AA seq
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MYSKTSSEYKVENDRLFAFYQENQDRKVRNHILQLNLGLVRKEVCHWINQCQENYDDLLQ
VGCLGLLRAIERFDPQKGYAFSSFALPYIRGEIQHYLRDKGYSIRIPRRCLELKTQSNRI
SRELRNKLNRQPTDKEIARELGVSIEEWYDVKLAHRNREPISLDATTNDEDDRTSLADCL
PDNQYRSFQLVQEDKIRLNNALSQLEDGTRKVLEFVFLQDLTQKETAEKLGISVITVSRR
VKKGIAKMRGLIEPEEF
NT seq
774 nt
NT seq
+upstream
nt +downstream
nt
atgtatagcaaaacttcttccgagtacaaagttgaaaatgatagattatttgccttttat
caggaaaatcaggatcgcaaagtgcgtaatcacattttacagctaaatttaggcttagta
agaaaggaagtgtgtcattggataaaccagtgtcaagaaaactacgatgatttattgcaa
gtaggatgtcttggtttacttcgtgccattgaaagattcgatcctcaaaaaggttatgcc
tttagttcttttgcactaccttatatcagaggagaaattcaacattatcttagagataag
ggttattctattcgtattcctcgccgttgtttggaattaaaaacccaatctaatcgtatt
tcaagagagttaagaaataaattaaatcgtcagcccacagataaagaaatcgccagagaa
ttaggagtctcgatcgaggaatggtacgatgtaaaattagctcatcgaaacagagagcct
attagtttagatgctaccactaatgatgaggacgatcgaacaagtttagcagactgttta
cctgataatcagtaccgtagttttcagttagtacaagaagataaaatcagattaaataat
gctttgtctcaattggaagacggtacgagaaaagtattagagttcgttttcttacaggat
ctaacacaaaaagaaactgctgaaaaattaggtattagcgttattacggtgtctcgacga
gtaaaaaaaggcattgctaaaatgagaggtttaattgagcctgaggaattttaa
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