Geminocystis sp. NIES-3709: GM3709_2438
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Entry
GM3709_2438 CDS
T04142
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
gen
Geminocystis sp. NIES-3709
Pathway
gen03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gen00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GM3709_2438
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gen03019
]
GM3709_2438
03400 DNA repair and recombination proteins [BR:
gen03400
]
GM3709_2438
Enzymes [BR:
gen01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
GM3709_2438
Messenger RNA biogenesis [BR:
gen03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
GM3709_2438
DNA repair and recombination proteins [BR:
gen03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
GM3709_2438
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
ResIII
Motif
Other DBs
NCBI-ProteinID:
BAQ65673
UniProt:
A0A0D6AS22
LinkDB
All DBs
Position
2767687..2769135
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AA seq
482 aa
AA seq
DB search
MMDKIQQLRNTLKHYWGYDNFRYPQEEIMMAILSGKDCLIVMPTGGGKSICFQLPALLQE
GLTIVISPLVALMENQVQELREKNLPAGILHSEVSKFDRKNTLFALKSEKLRLLYLSPET
LLSPSIWEIISIREIKINSLILDEAHCLAQWGESFRPAYRRLGTIRSCLLNYKPSSTKIP
IASFTATADINTQKTIIESLQLINPQKFLISPYRDNLKIEVKTIWTPKGRKQELIKYIQR
KKKESGLIYVRTRKDSEELAHLLNEAGYPNQPYHGGLGSNIRRKIESDWLKETIKFVVCT
CAFGMGINKSNLRWIFHYQAPLLLSEYIQEIGRGGRDGKLTEAVTLISEASGWLNPEDKQ
RREYFLNQQIKLYQQAEEFLKQIPIKGNIEELSRKFNNPNYQLYLSILNSSEQLQWIDTS
QYQLTPKKTHQSIQSLINQQKKLTYQTHQYLITKTCRWHFLLSAFGFSPSTNFRCGRCDN
CK
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
atgatggataaaatacaacaactaagaaatactcttaaacactattggggttacgataat
tttcgataccctcaagaagaaatcatgatggctattttgtcaggaaaagattgtttaatt
gttatgccaacaggaggaggcaagtcaatttgttttcagttacctgctttattacaagag
ggtttaactatagttatttctcctttagtggctttgatggaaaatcaagtacaagagttg
cgagaaaaaaatttacccgcaggtattttacatagtgaggtgagtaagttcgatcgaaaa
aatactctttttgccttaaaatcagaaaaattaagattactttatctgtctccagaaact
ttactttcaccatctatctgggaaataattagcattcgggaaattaaaattaatagttta
atcttagatgaagctcactgtttagcacaatggggggagtcttttcgtccagcttatcga
cgtttaggcacgattcgttcatgcttacttaattataaaccatcaagtaccaaaatcccg
atcgcatcttttactgccactgccgatataaatactcaaaaaactatcattgaatcctta
cagttaatcaatcctcaaaaatttttgattagtccttaccgtgataacttaaagatagag
gtaaaaacaatttggacaccaaaaggaagaaaacaagagttaattaaatatatccaaaga
aaaaagaaagaaagtggcttaatttatgtacgcaccagaaaagatagcgaagaattagct
catttattaaatgaagcgggttatccaaatcaaccctatcacggaggattaggtagcaac
atccgcagaaaaatagaatctgattggctaaaggaaacaataaaatttgtagtttgtact
tgtgcctttggtatgggaataaataaaagcaatcttagatggatttttcattaccaagct
ccattattgttgtcggagtatattcaagaaataggaaggggtggcagagacggaaaacta
acggaagcagttactctgattagcgaagcaagtggttggttaaatcccgaagataagcaa
aggagagagtattttttaaaccaacaaattaaactttatcaacaagcagaagaattttta
aagcaaatacccataaaaggaaatattgaagaattatcgagaaaatttaacaatcctaac
tatcaactatatttatctattcttaatagtagtgaacaattgcagtggattgatacttct
caatatcagttaaccccaaaaaaaacccatcagtcaatacaatctcttattaatcaacaa
aaaaaattaacttaccaaactcatcaatacctaattacgaaaacctgccgatggcatttc
ttgttatcagcttttggcttttctccttcgacaaattttcgttgtggtagatgcgataac
tgtaaataa
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