Geminocystis sp. NIES-3709: GM3709_2552
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Entry
GM3709_2552 CDS
T04142
Name
(GenBank) DNA-directed RNA polymerase alpha subunit
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
gen
Geminocystis sp. NIES-3709
Pathway
gen03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
gen00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
GM3709_2552
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gen03021
]
GM3709_2552
03400 DNA repair and recombination proteins [BR:
gen03400
]
GM3709_2552
Enzymes [BR:
gen01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
GM3709_2552
Transcription machinery [BR:
gen03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
GM3709_2552
DNA repair and recombination proteins [BR:
gen03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
GM3709_2552
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_A_CTD
RNA_pol_L
HHH_5
HHH_XRCC3_RpoA
RNA_pol_L_2
Motif
Other DBs
NCBI-ProteinID:
BAQ65787
LinkDB
All DBs
Position
2875107..2876096
Genome browser
AA seq
329 aa
AA seq
DB search
MAVFKIDCLVNKTQKNQGQYGKFVLEPLGRGQGITLGNSLRRVLLSNLEGAAVTAVRIAG
VNHEFAVVEGVREDVLEIMLNMKGITFKSYTNTPQIGRLVAIGPCTVTAAKFDLPSEIDV
VEPSQYICTLGKGAKLEMEFKVEKGKGYRAIEKGKDEHSSLDFLQIDSVFMPVTRVNFAV
EEIRYEGEMSDRLILEIWTNGSIKPEEALSDASTILVDLFTPLMDATSISGQPEELEEPE
DPASQIPIEELNLSVRAYNCLKRAQINTVADLLEYSQDDLLEIKNFGQKSAEEVIEALQQ
RLGITLAEGKMKETPGGDLIQSAEPVATP
NT seq
990 nt
NT seq
+upstream
nt +downstream
nt
gtggctgtgtttaaaatagactgcttagtaaataaaactcaaaaaaatcaaggacaatat
ggtaaatttgtactagagcctttgggaaggggacaaggtataactttgggtaattccttg
aggcgggtgctgttgtccaacttagaaggggcggcggtaactgccgttagaatcgcaggg
gtaaatcacgaatttgctgttgtagaaggggtaagagaagatgttttagaaatcatgcta
aacatgaaagggattacatttaaaagctacacaaacacacctcaaattggtcgtttagta
gccattggcccttgtactgttacagccgctaagtttgatttaccatcagaaatagatgtc
gttgaaccaagtcagtatatttgtactttaggtaaaggtgcaaaattagagatggagttt
aaagtcgagaagggtaaaggttatcgagccattgaaaaaggtaaagatgaacatagctcc
ctcgattttttgcaaatcgattctgtgttcatgcccgttactagagttaacttcgcagta
gaagaaattcgctatgaaggagaaatgtccgatcgtctaattttagaaatttggacaaat
ggaagcataaaaccagaagaagctctatctgatgcgtcaacaattttagtggatttattt
actcctttaatggacgctacgagcatttctggtcaacccgaagaactggaagaaccagaa
gatccagcaagtcaaatacccattgaagaattgaatctttctgttcgtgcttacaactgt
ttgaaacgagcgcaaatcaatacggtagctgatttattggaatattctcaagatgacctc
ttagaaattaaaaatttcggacaaaaatctgcggaagaagttattgaggctttgcaacag
cgtttaggaattactttagctgagggaaaaatgaaagaaactcccggtggtgatttaatt
caaagtgctgaacccgttgctaccccataa
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