Geminocystis sp. NIES-3709: GM3709_2726
Help
Entry
GM3709_2726 CDS
T04142
Name
(GenBank) exoribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
gen
Geminocystis sp. NIES-3709
Brite
KEGG Orthology (KO) [BR:
gen00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
gen03016
]
GM3709_2726
Enzymes [BR:
gen01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
GM3709_2726
Transfer RNA biogenesis [BR:
gen03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
GM3709_2726
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD_RNase_II
HTH_RNase_II
Motif
Other DBs
NCBI-ProteinID:
BAQ65961
UniProt:
A0A0D6AT83
LinkDB
All DBs
Position
3066226..3068229
Genome browser
AA seq
667 aa
AA seq
DB search
MEKGTLVEFRVNNDRRLAVVDKPEGKKDWIAIDERGNPHKIRPQRVDYQIKGESFKYTEI
TKFKAEIEPYLDESNLEIAWELLVEDSTPVTPLELASLIFSEETPAVCYAAHILLSDDKI
YFKRKGDVYEPRSSAQVEEIKHQIEIETQKKQEKEGFITKLQKALEGETVRWQESDSVKL
NFLEKYALQPDNPPKQAQEILESLGRQKSGDSAVQLLIDLKLWDKHENIFLRRSSYPNYF
PLQVSEAAHSILEQISAGTIEDTNHRLDLTHHKVYTIDDETTEEIDDGLSVETLEDGTLR
YWVHIADPTRLIKPGDILDREARKRSTSLYLPTGMIPMFPQELATGPMSLVQGQICPALS
FGVTLDDNGGVIDYEIHSTLIKPTYRLTYHDVDEMLHLNIQAEQQVKQLAEAAKKRSQWR
KDNGSVMISMPEAIIKVKDNEEVTIELLDPSFSRSLVAEMMILTGEVAGKYCQEHNIPVA
FRSQPQPELPPEEELILLPPGPVRSCALRRCMPKSETGLSAARHASLGLEAYTQVTSPIR
RYTDLLAHFQIKAHLRGDELPFHRDKMQEMIFEVMATSSEAVLVERQTNRYWSLQYLQKH
SGEIWHGLVLRWLREDENLALILLEDLGLEFAHRFDRVPKIGEQLRLQVHFCDPQRDEIR
FKEAVSS
NT seq
2004 nt
NT seq
+upstream
nt +downstream
nt
gtggaaaaaggtactttagttgaatttagagttaataacgatcgtcgtttagctgtagta
gataaaccagaaggaaaaaaagattggatagccatagatgaaagaggaaatccccacaaa
attcgtccccagagagtagattatcaaatcaaaggagaatctttcaaatataccgaaatc
accaaatttaaggcagaaatagaaccttatttagacgaatccaacttagaaatagcatgg
gagttattggtggaagactcaacccctgttacacctttagaattagcgtctctaattttt
tccgaagaaactccggcggtatgctatgccgcccatattcttctatccgatgataaaatt
tattttaagagaaagggtgatgtttatgaacctcgatcgagcgctcaagtagaagaaatt
aagcatcaaatcgaaatagaaacccaaaagaaacaagaaaaagaaggatttatcactaaa
cttcaaaaagcattagaaggggaaaccgttagatggcaagaaagcgattcggtgaaactc
aactttttagaaaaatatgctttacaacctgataaccctcccaaacaagcacaagaaatt
ttagaatccctcggtcgacaaaaaagtggtgattctgcggtacagttgctgatagactta
aaactatgggataaacatgaaaatatattcttacgtcgtagttcttaccctaattatttt
cctctgcaagtatctgaagctgctcattctatccttgagcaaatttccgccggtacgatc
gaagatacaaatcatcgacttgatttaactcatcataaagtatatacgatcgatgatgaa
accaccgaagaaatagacgacggtttaagcgtagaaaccttagaagatggcacattacgc
tattgggtacatatagcagatcccacccgtttaatcaaacccggagatattttagatcga
gaagctcgaaaacgtagtaccagtttataccttcccactgggatgattcccatgtttcct
caagaactagccacaggccctatgagtttagttcaaggtcaaatttgccctgcattgagt
tttggggttactcttgacgataatggtggagttatagactatgaaattcactctacccta
atcaaaccaacttatcgtttgacttatcatgatgttgatgaaatgttacatttgaatatt
caggcggaacaacaagtaaaacagttggcagaagcggccaaaaaacgatcgcagtggcgc
aaagataatggatctgtgatgatttctatgcctgaagctatcatcaaagtaaaggacaat
gaagaagttacgatcgaattattagatccttctttttctcgttctcttgtggctgagatg
atgatattaacaggggaagtagcaggaaagtattgtcaagaacataatatccccgtagct
tttaggagtcaaccgcaaccagaattacccccagaagaagaattaatacttttaccccct
ggccctgtaagatcttgtgctttaaggcgttgtatgcctaaaagtgaaacaggattatcc
gccgcccgtcatgccagtttagggttagaagcttatactcaagtaacctcacccattcgt
cgttatacggatttactagcccattttcaaattaaagcccatttacgaggagatgaatta
cctttccatagggataagatgcaggaaatgatattcgaggtaatggctacatcttctgaa
gctgtgttggtagaaagacaaacgaatcgttattggagtttacaatatttacaaaaacat
agcggcgaaatttggcatggtttggtattgcgttggttacgggaagacgagaatttagcc
ttgattttattagaagatttaggattagaatttgcccatcgttttgatcgtgttccaaaa
ataggagagcaactgaggttacaagtacatttttgtgatcctcaacgagacgaaattcgc
tttaaagaagcagtaagtagttaa
DBGET
integrated database retrieval system
