Geminocystis sp. NIES-3709: GM3709_3148
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Entry
GM3709_3148 CDS
T04142
Name
(GenBank) DNA-directed RNA polymerase delta
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
gen
Geminocystis sp. NIES-3709
Pathway
gen03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
gen00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
GM3709_3148
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gen03021
]
GM3709_3148
03400 DNA repair and recombination proteins [BR:
gen03400
]
GM3709_3148
Enzymes [BR:
gen01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
GM3709_3148
Transcription machinery [BR:
gen03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
GM3709_3148
DNA repair and recombination proteins [BR:
gen03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
GM3709_3148
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_4
RNA_pol_Rpb1_3
RPOC_hybrid
DUF3006
Motif
Other DBs
NCBI-ProteinID:
BAQ66383
UniProt:
A0A0D6AU05
LinkDB
All DBs
Position
3542195..3546112
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AA seq
1305 aa
AA seq
DB search
MPTEKKTQTFYNTVIDKGSLKKLISKTFTEHGSSRCASVCDKLKTMGFRYATQAAVSISV
EDLKVPESKKAMLAVAETTIKDTLNRYANGEITEVERFQKVIDTWNDTSESLKDEVVRNF
RQSDPLNSVYMMAFSGARGNISQVRQLVGMRGLMADPQGEIIDLPIKTNFREGLTVTEYI
ISSYGARKGLVDTALRTADSGYLTRRLVDVSQDVIIRETDCGTTRGVTVLPMKDGERVLI
PLGDRLLGRVLGEDVIDPATGEVIGTRNQAIDANLAKVIGNAVDKVKVRSPLTCDTARSV
CQKCYGWSLAHGDWVNMGEAIGIIAAQSIGEPGTQLTMRTFHTGGVFTGEVAQRIITPKA
GTVKFDKKLKVRDTRTRHGDQKLLVEIAGNILVGDQKINVPAGSLLAVREGDIVQVEDLL
AEVMPQKTRSTERVTKDVSSDLSGEVYFADISPESKTDRQGNTTTTVTRNGLIWVLSGQV
YNLPPGAEPVVKNGSKISKGSVLAETKLKTKSGGVCRFEEGSREIEIITASVSLDQADIY
LEHNGSQQQYVIHTPKGDRFALKVVPGTKVQNNQVVAELIDDTFRTNTGGIMRYAGLETG
RGNRKQGYEVIKEGTLIWIPEESHEINKDISLLLVEDGQYVEAGTEVVKEIFCQSSGIVE
VIQKNDILREIIVKPGQLYMDLDPDYLATIEDGTIIPPGTEIAPGSVTEDEFLAEFVDTN
EGVGLLLRPMKQYEIFNTTQSPSQESLNSAGGAINLRPVLRTFFKDGERVKSVEGVQLVT
TQLVLETVEGMSADIELIPHETDEDGFRLQIVVLESVMLRREMESDANIITRVLVTDGQE
IAPGAVVGTTEILCLEDGTIQGVREGLEAIRRILVVREDDLMTVKIDGKPTCKVGDYITQ
GQSLTANVNAKQSGQVLEIKDDQIILRYARPYRVSAGAILHIEQGDLVQRGDNLVLLVFE
RAKTGDIVQGLPRIEELLEARKPKEPALLAKRPGICQVEYRDDEAIDVKVIEDDGTISEY
PLNQNQNIIVNDNQRVEVGEPLTDGLPSPHEMLEVFYGYYQEHMGMYDAALAALQKAQLF
LVNQVQGVYQSQGIDISDKHIEVIVRQMTSKVRVDDGGDTIRLPGELVELREIEKDNETM
SITGGAPVQYTPMLMGITKSSLNTDSFISAASFQETTRVLTEAAIEGKSDWLRGLKENVI
IGRLIPAGTGYNAYDQHLDWDDPEPNVSTTISYSDSWEQEENNSLSISEVEDVIIDDQVA
RVLSPDDSLNDDSLISDYSDRDDDDDFDDDDDFDDDQNDYDDDDD
NT seq
3918 nt
NT seq
+upstream
nt +downstream
nt
atgcctacagagaaaaaaactcaaactttctataacactgttattgataaaggctctctc
aaaaaactgatttctaaaactttcacagaacacggatcttctcgttgtgcttctgtttgt
gataagttaaaaactatgggctttcgctatgccactcaagcggcagtgtctatcagtgta
gaagatttgaaagtacccgaaagcaaaaaagcaatgttagcagtggcagaaactaccatc
aaggatactctaaatcgttatgctaatggggaaatcacggaagttgagcgtttccaaaaa
gtaattgatacttggaatgatacttcagaatctttgaaagatgaagtggtgcgtaatttc
cgtcaatcagatcccctcaattctgtctatatgatggcattttctggagcaaggggtaac
attagtcaggttcgtcagttagtaggtatgcgtggcttgatggctgatcctcaaggagaa
atcatcgatttacccattaaaactaatttccgtgagggattaacggtaacagaatatatt
atttcttcttacggtgcaagaaaaggtttagttgatactgctttgcgtactgctgactct
ggttatttgactcgtcgtttagtagatgtttctcaagatgtaattattcgtgagactgat
tgcggtacaaccagaggcgttactgttttgccaatgaaggatggggaaagggtattaatt
cctttaggcgatcgacttttagggcgagttttaggagaagatgttattgatccagccact
ggagaagttattggtactcgtaatcaggctattgatgctaatttagctaaagtaatcggt
aatgcagttgataaagtaaaggtcagatctcctcttacttgcgatacggctcgttctgtg
tgtcaaaaatgttatggttggtcattggctcatggagattgggtaaatatgggtgaagcg
atcggtattattgccgcccagtctatcggtgaaccaggtactcagttaaccatgcgtact
ttccacactggtggggtgtttactggggaagttgcccaacgtattattactcccaaagca
ggtactgttaaatttgataaaaagctaaaagtccgtgatactcgtactcgccacggggat
caaaaattattggtggaaatcgctggtaatattcttgtgggggatcaaaaaattaatgtt
cctgcaggtagtttattagccgtcagagaaggagatatagtacaggttgaagatttatta
gccgaagtaatgcctcaaaaaactcgatcgacagaaagagtcaccaaagatgtttcttct
gatctctctggagaggtttattttgctgatatttctcctgaaagtaaaaccgatagacag
ggtaacaccactactactgtaacccgtaacggcttaatttgggtactctcaggacaagtt
tacaacttacctcccggtgctgaacctgtggtcaaaaatgggagtaaaatctctaagggt
tcagtattagcagaaaccaagctgaaaactaaaagcggtggggtttgtcgttttgaggaa
ggcagtcgagaaattgaaattatcacggcttctgtatctttagatcaagctgatatttac
ctcgaacataatggcagtcaacaacaatatgttattcatactccaaaaggcgatcgtttt
gccttaaaagttgtacctggtacaaaagttcaaaataatcaagtagtagcagaattaatt
gatgatactttccgaactaacactggtggtatcatgcgctacgctgggttggaaacaggg
cgaggcaaccgtaaacaaggctatgaagtcattaaagaaggtactttaatctggattcct
gaagaaagccacgaaatcaataaagacatctctcttttattagtggaagatggtcaatat
gtggaagcaggtacagaagtagttaaagagattttctgtcaatcgagcggtattgtagaa
gtaattcagaaaaatgatattttacgggaaattatcgttaaacccggacagttatacatg
gacttagatcctgattacttagccacgatcgaagatgggacaatcatccctccgggtaca
gaaattgctcccggttcggtaacagaagatgagtttttggcggaatttgtggatactaac
gaaggggtggggttattacttcgtcctatgaaacagtatgaaatatttaacacaactcaa
tctccttcccaagaatccttaaatagtgcaggaggtgctattaatctacgtcctgtattg
cgtactttctttaaagatggtgaaagagttaaaagtgttgaaggagtacaacttgttaca
actcaattagtcttagaaactgttgagggtatgagtgcggatattgaattaataccccat
gaaacggatgaagatggtttccgtttgcaaattgtggtgttagaatcggtgatgttgcgt
cgggaaatggaaagtgatgcaaatattattactcgtgtattagtcaccgatggtcaggaa
attgctccgggtgctgtagttggtactactgaaattctttgtttggaagatggtactatt
caaggtgttcgggaaggtttagaggcaattcgtcgtattttagtagtcagagaagatgat
ttaatgaccgttaaaattgatggaaaaccaacttgtaaagttggcgactatattactcaa
ggacaatcattaactgctaatgttaatgctaaacaatcaggacaagttttagaaattaaa
gatgatcaaataatcttacgttatgctcgtccttaccgtgtttctgctggagcgatttta
cacatcgaacaaggagacttagtacaacggggtgataatttagtattactcgtgtttgaa
cgggcgaaaacaggggatattgttcaaggtttaccaagaattgaggaattattagaagcc
cgtaaaccaaaagaaccagccttgttagcaaagcgtccgggtatttgtcaggtagaatat
cgggatgatgaagcgatcgatgttaaagtgatcgaagatgacggtactatttcagagtat
cctcttaaccaaaatcaaaacattattgtgaatgataatcaacgggtagaagtaggtgaa
cctttaacagatggtcttcctagcccccatgaaatgttagaggtattttatgggtattat
caggaacatatgggaatgtatgatgccgcattggccgcattacaaaaagctcaattattt
cttgtcaatcaagttcaaggggtttatcaatctcaaggtattgatatttctgataaacat
attgaagtaattgttcgtcagatgacttctaaggtaagagttgatgatggtggtgatacg
attcgtcttccgggggaattggtggagttacgagaaatcgaaaaagataacgaaaccatg
tctattactggtggcgcccctgttcaatatactcctatgcttatgggtattactaaatct
agtttaaacaccgatagctttatttcggcggctagtttccaagaaacaacaagagtattg
acagaagcagcgatcgagggtaaatcagattggttgcgaggattgaaggaaaacgtaatt
attggacgtttaattcctgccggtactggttataatgcctatgatcaacatctcgattgg
gacgatcctgaacccaatgtttctactactatctcttatagtgattcttgggaacaagaa
gaaaataattctttatcaattagtgaagttgaagatgtaattattgatgatcaagttgcc
cgtgtattgtctcccgatgattcattaaatgatgatagcttaattagcgattatagcgat
cgtgatgacgatgatgattttgacgacgatgatgattttgacgatgatcaaaatgactac
gatgacgatgatgattaa
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integrated database retrieval system
