Geminocystis sp. NIES-3709: GM3709_493
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Entry
GM3709_493 CDS
T04142
Name
(GenBank) Zn-dependent hydrolase
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
gen
Geminocystis sp. NIES-3709
Pathway
gen03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gen00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GM3709_493
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gen03019
]
GM3709_493
Messenger RNA biogenesis [BR:
gen03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
GM3709_493
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
Lactamase_B
RNase_J_C
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
DUF3821
Motif
Other DBs
NCBI-ProteinID:
BAQ63728
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Position
576063..577952
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AA seq
629 aa
AA seq
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MYQIQARKRKTTASEKPTVILPERNKNKKPTLKIIPLGGLHEIGKNTCIYEYEDELILVD
AGIGFPTDGMHGINVVLPDMTYLKENQHKIKAMVATHGHEDHIGGIPYHLKQIDTPIIYG
PRLAMSLLRDKLEETGLQDRTIIKSVSPRDVVKIGKHFRVEFIRNTHSIADSFTLAIHTP
IGVLIHTGDYKVDHTPVDGEYFDFHRLAELGQEGILCLLGDSTNSEVPGFTPSERSVYPG
LEKVFNQAKGRLMVTTFSTSVHRINMLLELAMQYNRKVGVVGRSMLNVIAHARNLGYIKC
PDNLFVPLRNLGSLPENEVLILCTGSQGEKFAAMTRISKGEHRQVKIRPGDTIIFSANPI
PGNTIAVVNTIDRLMMQGANVVYGKQANVHVSGHGCQEDQKLILSLARPKFFVPVHGEHR
MLVQHSKTAQSVGIPAENIVIIQNGDTIELTADSISKGEKVPSGIQLVDTAGVVHDNVME
ERQRLAEDGVITIAASVDNQGRLLTQPQINLRGVVCKIEVSTLERMIIRTVDKTIGDRLK
SSLLLNGHDQVNWTSIRIDVETNLERLIQRELNSESLVIFMLQVQENTSKTVTNNNNGNN
NVTNIDSEEEEEETDGKFTRRRRKTTVSV
NT seq
1890 nt
NT seq
+upstream
nt +downstream
nt
atgtatcaaattcaagctagaaaaagaaaaaccacagcttccgaaaaacctacagttatt
cttccagaaagaaataaaaataaaaaaccgactttaaaaataattcctctcggtggttta
catgaaataggaaaaaatacttgcatctatgaatatgaagatgaacttattttagttgat
gctggtatcggtttccctacagatggaatgcacggtattaatgttgttttacctgatatg
acttatctgaaagaaaatcagcacaaaattaaagctatggtagcaactcatggtcacgaa
gatcatatcggtggtattccttatcatcttaagcagatagacactccgattatttatggc
cctcgtttggctatgtctctattgcgtgataaattagaggaaacgggattacaagatcgc
acaatcattaaatctgtttcaccccgtgatgttgttaaaattggtaaacattttcgagtt
gagtttattcgcaatacacactcgatcgctgatagttttacccttgcgattcatactcct
atcggtgttttaattcatacgggagattataaagtagatcatacccctgtagatggagaa
tatttcgattttcaccgtttagcagaattaggacaagagggcatattatgtttactggga
gattcgactaactcagaagtaccgggttttacaccttcggaaagatccgtttatcccggt
ttggaaaaggtttttaaccaagctaaaggacgattgatggtgacaactttttctacttct
gtacatcggattaatatgttgctagagttagcgatgcagtataatcgtaaagtaggagta
gtgggtcgatcgatgttaaacgttattgctcatgctcgtaatttaggttacattaaatgt
cccgataatttatttgtaccgttgcgtaatttaggtagtctaccagaaaatgaggtatta
attctctgtactggttctcagggagaaaaattcgccgccatgacgagaatttctaagggt
gaacatcgtcaggttaaaatccgtccaggtgatactattattttctcggctaatcctatt
ccgggtaatactattgctgtcgttaatactattgatcgactgatgatgcaaggcgcgaac
gtagtttatggtaaacaagcgaatgtacacgtttctggccatggttgtcaagaagaccaa
aaattaattttatctcttgctagaccgaaattttttgtaccggtacatggtgagcataga
atgttagtacaacactcaaaaactgcccaaagtgttggtattcctgcggaaaatattgtt
attatccaaaacggtgacacgatcgaattaacggcagatagtattagtaagggtgaaaaa
gttccttcgggtattcaattagtcgatactgctggagtggttcatgataacgtaatggaa
gaacgtcaacgtctagctgaagatggagttattaccattgccgctagtgttgataatcaa
ggacgtttattgacacaaccacaaatcaatttacggggtgttgtctgcaaaattgaagtt
tcaactcttgagcgtatgattattcgtacagtggataaaaccattggcgatcgtttgaaa
agtagtttactattaaatggtcatgatcaagtcaattggacgagtattcgtatcgatgtt
gaaaccaatttagagcgtttaattcaaagagaattaaatagtgaatctctagtgattttt
atgctacaggttcaagaaaatacatcaaaaactgtcacgaacaataataatggtaataac
aatgttactaatattgatagtgaagaagaggaagaagaaactgacggaaaatttactcgc
cgtcgtcgtaagacaactgtttcagtttaa
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