Geminocystis sp. NIES-3709: GM3709_860
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Entry
GM3709_860 CDS
T04142
Name
(GenBank) excinuclease ABC subunit A
KO
K03701
excinuclease ABC subunit A
Organism
gen
Geminocystis sp. NIES-3709
Pathway
gen03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
gen00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
GM3709_860
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gen03400
]
GM3709_860
DNA repair and recombination proteins [BR:
gen03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
GM3709_860
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
GM3709_860
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrA_inter
UvrA_DNA-bind
ABC_tran
SMC_N
AAA_29
RsgA_GTPase
AAA_21
AAA_23
AAA_16
nSTAND1
nSTAND3
NACHT
AAA_22
DnaJ_CXXCXGXG
AAA_18
AAA_28
Viral_helicase1
MMR_HSR1
ATPase
cobW
MeaB
zf_C2H2_13
Motif
Other DBs
NCBI-ProteinID:
BAQ64095
UniProt:
A0A0D6AN22
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All DBs
Position
958573..961404
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AA seq
943 aa
AA seq
DB search
MMIHIRGARQHNLKNIDLDLPRNKLIVFTGVSGSGKSSLAFDTIFAEGQRRYVESLSSYA
RQFLGQLDKPDVDSIEGLSPAISIDQKSTSHNPRSTVGTVTEIYDYLRLLYGRAGFPHCP
ICDHSITPQSIDEMIDRILSLPEKTKIHLLAPVVRGKKGNHHQLLSSLRSQGFVRVKIDN
EIRELADNIELKASQSHHISVLVDRLIVKPNLQERLADSLSTCLKIADGIALVEIFSGEG
VISRKDAKTQREDAKFFEEQIVFSEKFACPTHGAVMEELSPRLFSFNSPYGACESCHGLG
SLRQFSPHSIIPDPKAKIINAIAPWAEKDNPYYLSLLEYVSKEYKFKLSDSWDSLTPQQQ
HIILYGDKEIQNIQYGYYRGVIPMLDKTYQETNSEIIKQKLEQYLDYQVCEVCHGKRLKP
EALSVKLGQYSIYDLTSVSIGECVNRINNIQLTPKQAQIGELALREIQQRLTFLLDVGLD
YLTLDRTAMTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNDRLLKTLKKLRD
LDNTLIIVEHDEDTIKSADHIVDIGVKAGVHGGEIVYQGNYENLLKCEQSLTGAYLSGRR
KIEIPTTRREGNGKFLTLKNCHRNNLKNIDVEIPLGKFVCITGVSGSGKSTLINELLYPS
LQHHLNRNVPFPKELGTLEGIESVDKVIVIDQSPIGRTPRSNPATYTGVFDVIRELFTET
IEAKARGYKAGRFSFNVKGGRCEACSGQGVNVISMNFLPDVYVQCDICKGARYNRETLQV
KYKGFSIADVLNMTVEEALQVFENIPRAVNRLQTLVDVGLTYIKLGQSAPTLSGGEAQRV
KLATELSRRATGKTIYLIDEPTTGLSFYDVHHLLNVLQKLADKGNSIVVIEHNLDVIKCA
DWIIDLGLEGGNKGGEIIAVGTPEKIAKSKKSYLAKYLKSCLR
NT seq
2832 nt
NT seq
+upstream
nt +downstream
nt
atgatgattcatattcgtggtgcaagacaacataatttaaaaaatattgatttagattta
ccccgcaataagttaattgtcttcacgggggtatctggtagcggaaaatcttcccttgcc
tttgatactatttttgctgaagggcaacgcagatatgtagaatctttgagttcctacgca
agacaatttttaggacagttagataaacccgatgttgatagtatagaaggtttatctccg
gctatatctatcgatcaaaagtccacttcccataatcctcgatcgacggtaggtactgtt
actgaaatttacgattatttacgattactctatggtagggcaggattcccccattgtcca
atctgtgatcattctatcacgccccagtccatcgatgagatgatcgatcgaattttatct
ttacccgaaaaaaccaagatacatttattagcacccgttgttagaggaaaaaaaggtaat
catcaccagttactctctagtttacgctctcaaggcttcgtaagagttaagattgataac
gaaattcgagaattagccgataatattgaactcaaagcctcacaatctcatcatatcagt
gttttagtcgatcgacttatcgttaaaccgaatcttcaggaaaggttagctgactctctc
tctacttgtctcaaaattgctgatggtattgcattggttgaaattttttctggtgagggg
gttatctctcgcaaagacgcaaagacgcaaagagaagacgcaaaattttttgaggagcaa
atagtattctcggagaagtttgcttgtcctactcatggagcagtgatggaggagttatcc
ccccgtcttttttcctttaattcgccctatggggcttgtgagtcttgtcacgggttgggt
agtttaagacagttttcacctcattcaatcatacctgatcccaaagccaaaataatcaat
gccatcgccccttgggcggaaaaagataacccctattatctctctctccttgaatacgtc
agcaaggagtataaatttaaactctctgattcatgggatagtcttacccctcaacaacag
catattatcctctacggcgataaggaaattcaaaatattcagtatggttattatcgtggg
gtgattcctatgttagataaaacctatcaagagactaattctgaaattattaagcaaaaa
ttagagcaatatttagactatcaagtctgtgaagtttgtcacggtaaacgtcttaaaccc
gaagccttatccgtaaaattagggcaatattctatctatgatttaactagcgtctctatc
ggtgaatgtgttaaccgtatcaataatattcaattaaccccaaaacaagcccaaatcggc
gaattagctttaagggaaattcagcaacgcctcacatttttactcgatgttggtttagac
tatcttaccctcgatcgtactgctatgacactttcaggaggagaagcccaaagaatccga
ttagccactcaaataggctcaggtttaacaggtgtcttatacgttttagatgagcctagt
atcggtttacatcaacgggataacgatcgactattaaaaaccttaaaaaaattacgagat
ctcgataatactttaattattgtagaacatgatgaggacacgatcaaatctgctgatcat
attgttgatattggtgtcaaagctggagttcacggcggcgaaattgtctatcagggaaac
tatgaaaatctcttaaaatgtgaacaatccttgacgggtgcatatctatcgggcaggaga
aaaatagaaatacccaccaccagacgagaaggcaacggtaaatttttaactctcaaaaac
tgtcaccgtaacaacctgaaaaatatcgatgtagagatacctctcggcaaatttgtttgt
ataactggggtatctggtagcggtaaatctaccctcatcaatgagttattatacccttcc
ctccaacaccatcttaaccgtaatgtacccttccccaaagaattaggcacattggaaggc
atcgaatctgttgataaagttattgtaatcgatcaatcccccatcggacgtactcctcga
tcgaatcctgccacttatacgggggtttttgatgtcattcgggagttattcacggaaacc
atcgaagctaaagccagaggctacaaagcaggtagattctcttttaacgtcaagggggga
agatgcgaagcctgtagcggtcaaggtgtcaatgtgatttccatgaatttcttacccgat
gtctatgtacaatgtgatatttgtaagggtgcaaggtataacagggaaactctccaagtt
aagtataagggattttcgatcgccgatgtgttaaatatgacggtagaggaagccttgcaa
gtgtttgaaaatatccctcgtgcggtaaatcgcctccaaacccttgtcgatgttggttta
acttatatcaaattagggcagtctgcacctactttatcggggggagaagcgcaacgggtg
aaactggctacggaattgtctcgccgtgccactggtaaaaccatatatttgattgacgaa
cccactacaggtttatctttttatgacgtgcatcacttattaaatgttttacaaaaatta
gcagataaaggaaattcgatcgtcgttatcgagcataatttagatgtgataaaatgtgct
gattggattattgatttaggtttggaaggaggcaataaaggaggagaaataatcgccgtt
ggtacaccggaaaaaatagctaaatctaaaaaatcttatttggctaagtatttaaaatct
tgtttacgataa
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