Geothrix sp. PMB-07: Q9293_02500
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Entry
Q9293_02500 CDS
T09655
Name
(GenBank) HD domain-containing protein
KO
K03698
3'-5' exoribonuclease [EC:3.1.-.-]
Organism
gep
Geothrix sp. PMB-07
Brite
KEGG Orthology (KO) [BR:
gep00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gep03019
]
Q9293_02500
Messenger RNA biogenesis [BR:
gep03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Q9293_02500
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HD
tRNA_anti-codon
Cas3_HD
TraI_2
Motif
Other DBs
NCBI-ProteinID:
WLT32203
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All DBs
Position
561410..562408
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AA seq
332 aa
AA seq
DB search
MPDQPLIRNLKEGEAFQGFLLAQEAAYKVSAKGSEYLELKLADASGDLKAFLWDIRAIEG
DMDAIQADVFLRVKGAVTTYNGRLQMKLDKVRFAADAEVGDFSAFFPVSSRPVPEMLAEL
DGLLDSVRDPWIQALLKALFIENGSLRAAFALAPAAKSMHHAFLGGLLEHTLSVLGMAER
ACAHYPSLNRDLVMAGALLHDVGKTAELSYQRSFGYTDAGNLLGHIAMEAEWISREVGKI
PGFPEELRLHILHIVLSHHGRLEFGSPVLPKTPEALLVHHLDDLDGKLEVMFRALQDDTG
TGAWSPYSRALDRVIYRRRWAGVAAEDGAVQN
NT seq
999 nt
NT seq
+upstream
nt +downstream
nt
atgcccgatcagcccctcatccggaacctcaaggaaggggaggccttccagggctttctc
ctggcccaggaagctgcctacaaagtcagcgccaaaggcagcgagtatctcgaattgaag
ctggcggatgcctcgggcgacctgaaggccttcctctgggatatccgggccattgagggc
gacatggacgccatccaggccgatgtctttctgcgggtgaagggtgcggtgaccacctac
aacggccgtctccagatgaagctggacaaggtccggttcgcggcggatgcggaggtgggg
gatttttcggccttcttccccgtgagctcgcggccggtgccggagatgctggcagagctg
gacggcctgctggactcggttcgggatccctggatccaggccctcctgaaggcgctattc
atcgaaaatgggagcttgcgggcggccttcgccctggcgcctgctgccaaatccatgcac
cacgcctttcttggcggcctgctggagcacaccttgtcggtcctgggcatggcggagcgg
gcctgcgcgcattaccccagcctgaaccgcgacctggtgatggcgggagccctcctgcac
gatgtcggcaagactgccgagctgagctaccagcgcagcttcggctacacggacgccggc
aacctcctgggccatatcgccatggaggcggaatggatcagccgagaggtgggcaagatc
cccggtttccccgaggagctccgcctgcacatcctgcatatcgtgcttagtcaccatggt
cgtctggaattcggatcgcctgtcctccccaagacaccggaggcattgctggtccatcat
ctggacgatctggatggcaagctggaagtcatgttccgggctctgcaggacgacacggga
acaggggcctggagtccctacagccgagccttggaccgcgtgatttaccgaaggcggtgg
gcaggggtggcagcggaggatggagctgtccaaaactga
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