Geothrix sp. PMB-07: Q9293_03910
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Entry
Q9293_03910 CDS
T09655
Name
(GenBank) FliA/WhiG family RNA polymerase sigma factor
KO
K02405
RNA polymerase sigma factor FliA
Organism
gep
Geothrix sp. PMB-07
Pathway
gep02020
Two-component system
gep02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
gep00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
Q9293_03910
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
Q9293_03910
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gep03021
]
Q9293_03910
09183 Protein families: signaling and cellular processes
02035 Bacterial motility proteins [BR:
gep02035
]
Q9293_03910
Transcription machinery [BR:
gep03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Q9293_03910
Bacterial motility proteins [BR:
gep02035
]
Flagellar system
Flagellar assembly proteins
Stator
Q9293_03910
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r4
Sigma70_r2
Sigma70_r3
Sigma70_r4_2
UPF0122
HTH_37
Sigma70_ECF
Motif
Other DBs
NCBI-ProteinID:
WLT32477
LinkDB
All DBs
Position
complement(892235..893194)
Genome browser
AA seq
319 aa
AA seq
DB search
MPPTPDQPSDYAVGHGQPLSGEALRVVESAPAALRPWAALAAAKAYGKSAAAPSQPLPTA
PVPTPDPALALAGVDSAEPPEPFDRENREQIIKDYVPLVKFVAHRIASRLPSHVELDDLI
NSGILGLMDAIEKFEPARNIKFKTYAELRIKGAILDGLRDLDWVPRSLRRKKKDIEGAYH
ALEQQMGRAATDEEVALHLGMPLEELHKNLDDLKGVTLGTFVEVGEDGEGESLISFVPDP
DAEDPHQTFQASEIKDILRDAMDVLPKKEKFVVQLYYFDELTMKEIGTLLNITESRVSQL
HTKAMLRLRGKLLEKHIEG
NT seq
960 nt
NT seq
+upstream
nt +downstream
nt
atgcctcccaccccggaccaaccctccgattacgccgtcggccacggccagcccctcagc
ggcgaggccctgcgtgtcgtggaatccgcccccgcggcgctgcgcccctgggccgccctg
gctgcggccaaggcctatgggaaatccgccgcggcccccagccaacccctccccaccgcc
cctgtgcccacgccggacccggcgctggcgctggcgggcgttgactcggcggagccgccc
gaacccttcgaccgcgagaaccgcgaacagatcatcaaggactatgtgcccctggtgaag
ttcgtggcccaccgcatcgcctcccgcctgccctcgcacgtggagctggatgacctcatc
aacagcggcatcctcggcctcatggacgccatcgagaagttcgagccggcccgcaacatc
aagttcaaaacctacgccgagctgcgcatcaagggcgccatcctcgacggcctgcgcgac
ctggattgggtgccccgcagcctccgccggaagaagaaggacatcgaaggcgcctaccac
gccctcgaacagcagatgggccgcgccgccaccgacgaggaagtggccctccacctgggc
atgcccctggaagagctgcacaagaacctcgacgacctgaagggcgtcaccctgggcacc
ttcgtggaggtgggtgaagacggcgagggcgaaagcctcatcagcttcgtgccggatccg
gatgcagaagatccccaccagaccttccaggcttccgagatcaaggacatcctgcgggat
gccatggacgtgctgcccaagaaggagaaattcgtggtgcagctctactacttcgacgag
ctgaccatgaaggaaatcgggaccctgctgaacatcaccgaatcccgggtatcccaattg
cataccaaggccatgctgcgactccggggcaagctcctggagaagcacatcgaagggtaa
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