Geothrix sp. PMB-07: Q9293_06185
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Entry
Q9293_06185 CDS
T09655
Symbol
holA
Name
(GenBank) DNA polymerase III subunit delta
KO
K02340
DNA polymerase III subunit delta [EC:
2.7.7.7
]
Organism
gep
Geothrix sp. PMB-07
Pathway
gep03030
DNA replication
gep03430
Mismatch repair
gep03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
gep00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Q9293_06185 (holA)
03430 Mismatch repair
Q9293_06185 (holA)
03440 Homologous recombination
Q9293_06185 (holA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
gep03032
]
Q9293_06185 (holA)
03400 DNA repair and recombination proteins [BR:
gep03400
]
Q9293_06185 (holA)
Enzymes [BR:
gep01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
Q9293_06185 (holA)
DNA replication proteins [BR:
gep03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
Q9293_06185 (holA)
DNA repair and recombination proteins [BR:
gep03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
Q9293_06185 (holA)
BRITE hierarchy
Motif
Pfam:
DNA_pol3_delta
DNA_pol3_delta_C
Motif
Other DBs
NCBI-ProteinID:
WLT32917
UniProt:
A0AA50HVR0
LinkDB
All DBs
Position
1411458..1412480
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AA seq
340 aa
AA seq
DB search
MAAPAAWLNQSFALVHGEDGDARRAAVEGWKQKHVDPEWADFTLTVCAEGCPWAEVMAAL
QEAAPLGAEARTVLVPAADNLFNRAKELPASVKAMLEKPPTGVNLLLVAWSTLPTAPGKA
LGAKPWTDWTKAGRVLKVGALEPLEIAGFIETEAKRMGLVLQGAASTLLAQRQGGNPGML
KRALEVLDLLAEDRRVNEAMVDQVTFRLAEQKAFAWSGAWQKGDAAGALRALRTALEDGD
EPLMMLGQVRREVDRLLRLVEAEAAGLKGGELLTALGLSPKQAFLLDGYRGALAKLKPKG
AKALLGRVNQCEKDLKGMAISRSEAPLLDLTLALCRAWGR
NT seq
1023 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgcctgcggcctggctgaaccagagcttcgccctcgtccatggcgaggatggc
gatgcgcggcgggctgccgtggagggctggaagcagaaacacgtggacccggaatgggct
gatttcacgctgaccgtttgcgccgagggctgtccctgggccgaagtgatggcggccctg
caggaggctgcacccctgggggcggaggcccgcacggtgttggtgcctgccgccgacaac
ttgttcaatcgggcgaaggagctgccggcctcggtcaaggcgatgttggaaaaaccgccg
actggggtgaacctcctgctggtggcctggtctaccttgcctaccgcgccggggaaggcg
ctgggtgccaaaccctggacggactggaccaaggcgggccgcgtcttgaaggtgggagcc
ctggagcccctggagatcgcaggcttcatcgagaccgaggccaagcggatggggctggtg
ctgcaaggcgctgcgagcaccctgctggcccagcggcagggcggcaaccccgggatgctc
aagcgggccctggaagtgctggacctcctggcggaggaccgccgcgtgaacgaggccatg
gtggatcaggtgaccttccgtttggccgagcagaaggcctttgcctggtccggggcttgg
cagaagggcgatgcggccggtgccctcagagccctgcgcacggccctggaggatggcgac
gagcccttgatgatgctcgggcaggtgcgccgcgaggtggaccgtctgctgaggctggtg
gaggcggaggccgcagggctcaagggaggagaactgctcacggccctgggcctgtccccc
aagcaggctttcctgctggatggctaccgcggggctttggccaagctcaagcccaagggg
gccaaggcccttctggggcgggtcaatcaatgcgaaaaggatctgaaaggcatggcgatc
tcccgcagcgaggcgccgctcctggatctgactttggcgctctgccgcgcctggggccgg
tga
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