Geothrix sp. PMB-07: Q9293_08485
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Entry
Q9293_08485 CDS
T09655
Name
(GenBank) exodeoxyribonuclease III
KO
K01142
exodeoxyribonuclease III [EC:
3.1.11.2
]
Organism
gep
Geothrix sp. PMB-07
Pathway
gep03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
gep00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Q9293_08485
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gep03400
]
Q9293_08485
Enzymes [BR:
gep01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.2 exodeoxyribonuclease III
Q9293_08485
DNA repair and recombination proteins [BR:
gep03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
AP endonucleases
Q9293_08485
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Exo_endo_phos
Exo_endo_phos_2
OSB_SSB
Thioredoxin_13
Motif
Other DBs
NCBI-ProteinID:
WLT33362
LinkDB
All DBs
Position
1894762..1895538
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AA seq
258 aa
AA seq
DB search
MRFYSWNVNGFRSVLKKGFMDWLEETEPDVLSLQEIRCEWEEVDLGVRRQLESAYDICWF
PATSKKGYAGAATLSKKDLGFSHTKGLGHEGYDAEGRMIVSRKDKLVFIAGYFPNASQGL
VRLPFKRQFAKDLSAIVAKHHKAGDQVILTGDMNVAPEEIDLARPKDNTKNPGFTPEERE
DFKLYLGTGLVDVLRERNPNTPGLYTWWTARGGARERNVGWRIDLFLASRPLLEKVKEAR
IHADVLGSDHCPISLELA
NT seq
777 nt
NT seq
+upstream
nt +downstream
nt
atgcgcttctacagctggaacgttaatggtttccgttcggtcctgaagaagggcttcatg
gactggctggaggagacggaaccggatgttctctcgctccaggaaatccgctgcgaatgg
gaagaggtcgatctgggggtgcgccgccagcttgaaagcgcctacgacatctgctggttc
ccggccacgagcaagaagggctatgcgggtgccgccaccctgtccaagaaggacctgggc
ttcagccacaccaagggcctgggccacgaaggctacgatgccgaaggacgcatgatcgtg
tcccgcaaggacaagctggtcttcatcgcgggctatttccccaacgcctcccaggggttg
gtgcgcctgcctttcaagcgccagttcgccaaggacctctcggccattgtggccaagcat
cataaggccggagaccaagtcatcctcacgggcgacatgaatgtggctcctgaagagatc
gatttggcgcgtcccaaagacaacaccaagaaccccggcttcacgccagaagaacgcgaa
gacttcaaactctatctgggaacggggctggtcgacgtgctgcgggagcgcaatccgaat
acgcctggcctctacacctggtggaccgcccgtggtggcgcccgtgaacggaatgtgggc
tggaggatcgacctcttcctcgccagtcgaccgctcttggaaaaggtgaaggaggcccgc
atccatgcggatgtcctgggctcagaccactgtccgatcagcctagagctggcttaa
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