Geothrix sp. PMB-07: Q9293_08715
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Entry
Q9293_08715 CDS
T09655
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
gep
Geothrix sp. PMB-07
Pathway
gep03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gep00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Q9293_08715
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gep03019
]
Q9293_08715
03009 Ribosome biogenesis [BR:
gep03009
]
Q9293_08715
Enzymes [BR:
gep01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
Q9293_08715
Messenger RNA biogenesis [BR:
gep03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Q9293_08715
Ribosome biogenesis [BR:
gep03009
]
Prokaryotic type
rRNA processing factors
Q9293_08715
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
WLT33406
LinkDB
All DBs
Position
1946790..1949018
Genome browser
AA seq
742 aa
AA seq
DB search
MNSKKTMLINATDPEEIRVATLIDGVLFDYDVEFLHNEKIKGNLYKAKVVRVDTSLQAAF
VHFGGQKNGFLPLGELPRDLSGDGRRARIQDVLQRDQEILVQAVREELGSKGAMMTGQVS
LAGRYLVITPGNPVNGISRKIEATEERRHFKQLIDTLDIPEDIGVIVRTASLGVTKEDFE
RDLEYLLDTYKEVLSRYKHRHGVGLVWQEDDVVTRTLRDTFSADVEEVQIDDLDTFHAAQ
SFFKRTMPQHLDVLKHYTGKKPLFSRHQLEEQIDRVYGRKVGLPSGGALVLDQTEALVAI
DVNSGKTSGDGVEDMAFKTNMEAAEEVARQLRLRDLAGLIAIDFIDMKRDTHIRAVQDRL
VDCLKADKARMEVGKINRFGVLVMTRQRIRPSLQHVNHESCPACAGTGKVKTIEAMALSV
VRKLHGILAKGGIGEIRVKLAPAIATAVLNQKRRELTQMEEESEAKISIQADWSMSYGEM
SAEIERSEEVPVEKPAPRPHREKGAPEDETVVLGGDSPISFDKALGVHGDGPKDAKKEAF
KYDRRDLQRAALDERERLRALFESAKPEDDESEEGAEEAGEDVKGEGAKRKRRRRRRKGG
ADRGAEAQVQTGGLEPRPEPNQRAVESQPEPPKATPDLVASLLTPNPRPKFGQAQAAPAV
EEVSKPKRTPRAKVASAPEAAPAPQVAAVVEAPVAEAPEKKKAAPKAKAPKTPAVKKAKA
EKPAPEEAPKVKATRAKKAKVE
NT seq
2229 nt
NT seq
+upstream
nt +downstream
nt
ttgaattccaagaagaccatgctgatcaacgccaccgatcccgaagagatccgggtggcc
actttgatcgacggggtgctgttcgactacgacgtcgagttcctgcacaacgaaaaaatc
aagggcaacctgtacaaggccaaggtggtccgggtggacaccagcctccaggccgccttc
gttcattttggaggccagaagaatggcttcctccccctgggcgagctgccccgggatctg
agtggcgatggccgccgggcccgcatccaggacgtgctccagcgggaccaggagatcctg
gttcaggccgtgcgtgaggaactgggcagcaagggcgccatgatgaccggccaggtgagc
ctggcgggccgctacctggtgatcacccccggcaatccggtcaacggcatcagccggaag
atcgaagccaccgaggaacggcgccacttcaagcagctcatcgataccctggacatcccc
gaggacatcggcgtcatcgtgcgaacggccagcctgggcgtgaccaaagaagacttcgag
cgcgacctggaatacctgctcgacacctacaaggaagtgctcagccgctacaagcaccgc
cacggtgtgggcttggtgtggcaggaggatgacgtcgtcacccgcaccctgcgcgacacc
ttcagcgccgatgtggaggaagtgcagatcgacgatctggacaccttccacgccgcccag
tccttcttcaagcgcaccatgccgcagcacttggatgtgctgaagcactacacgggcaag
aagccgctgttctcccgccatcagctggaagagcagatcgaccgagtttatggccgcaag
gtgggcctgcccagcggcggcgccctggtgctggatcagaccgaggccctggtggccatc
gacgtgaacagcggcaagacctctggcgacggtgtggaggacatggccttcaagaccaat
atggaggccgcggaagaagtggcccgccagctgcggctgcgcgacctggctggcctcatc
gccatcgacttcatcgacatgaagcgcgacacccacattcgtgccgtccaggatcgactg
gtggattgccttaaggccgacaaggcccgcatggaggtggggaagatcaaccgcttcggc
gtgctggtgatgacccgccagcgcatccgtcccagcctgcagcacgtgaaccacgagagc
tgcccggcctgtgccggaacgggcaaggtgaagaccatcgaggccatggccctgtccgtg
gtgcgcaagctgcacggcatcctggccaagggcggcattggcgagatccgcgtgaagctg
gccccggccattgccacggcggtcctcaaccagaagcgccgtgagctgactcagatggaa
gaggagagcgaggcgaagatctccatccaggccgactggtccatgagctacggggagatg
tccgccgagatcgagcgcagcgaagaggttcccgtcgagaagcccgcccccaggccccat
cgggagaagggcgctcctgaagacgagaccgtggtgctgggcggcgatagtcccatttcc
ttcgacaaggccctgggtgtgcatggcgatggccccaaggacgccaagaaggaagccttc
aaatacgatcgccgcgacctccagcgggcggccctcgatgagcgtgagcgcctgcgtgcc
ctctttgaaagcgccaagcccgaggatgatgagtccgaggagggggccgaggaggctggc
gaggatgtcaagggtgaaggtgccaagcgcaagcgccgtcgtcgtcgtcgcaagggtgga
gcggatcgcggcgccgaggcccaggtgcagaccgggggcctggaaccgcgccccgagccc
aaccagcgtgctgttgaatctcagcccgaacctcccaaggccacgccggatctggtcgcc
agcctgctgacgcccaatccccggccgaagttcggccaggcccaggccgctccggcggtg
gaggaggtttccaagcccaagcgcaccccgcgcgccaaggtggcttccgcgcctgaggct
gctccggctccgcaggtcgctgccgtggttgaggcccctgtggccgaagctcccgagaag
aagaaggctgcgcccaaagcgaaggcccccaagaccccggctgtgaagaaggccaaggcc
gagaagcccgcccctgaggaggccccgaaggttaaggccacccgggcgaagaaggcgaag
gtcgagtag
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