Geothrix sp. PMB-07: Q9293_11020
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Entry
Q9293_11020 CDS
T09655
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
gep
Geothrix sp. PMB-07
Pathway
gep03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gep00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Q9293_11020
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gep03019
]
Q9293_11020
03009 Ribosome biogenesis [BR:
gep03009
]
Q9293_11020
Enzymes [BR:
gep01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Q9293_11020
Messenger RNA biogenesis [BR:
gep03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Q9293_11020
Ribosome biogenesis [BR:
gep03009
]
Prokaryotic type
rRNA helicases
Q9293_11020
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Terminase_6N
CMS1
Motif
Other DBs
NCBI-ProteinID:
WLT30249
LinkDB
All DBs
Position
2479610..2481265
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AA seq
551 aa
AA seq
DB search
MSDTTFAALGCSEALLAALAKRGFEAPMPVQEQTFKPGLEGRDLLVQSRTGSGKTLAFGL
PLLHRLTEARHPQALILAPTRELAQQVGAELHSLVPKLPIASLVGGVAYPPQIRSLQLGA
QVVVGTPGRIMDHLERGTLDLGKVSMIVLDECDEMLNMGFLEDVEKILSKVPAGPQTYLF
SATLPAPIAKLAKRFLKNPVQISLAEAGEHAVHADIAHTPVLVPDHQQVRALVNILLKDQ
PSAALIFTKTKAQTEEVAEELTVSGLPAAFLHGDLAQATRTRILGQFKEGKLRYLVATDV
AARGLDIGGLPLVVHMGIPTQLESYIHRSGRTGRAGAKGSSMALVGWKESRILLAWSRRG
GLTLDWRAVPTPAEIREAQAAKLLDGIQGSASAALLHQATQMLKDADPVRLVAGLLGLVQ
ADQASGFDLPNEPEKKPKSRFDSPRERKEGGPRPQRTYAERAAARGTDRPDSAFSKTRPD
GSFKPRSEFEDRPRPYAKPTKPRPDSAERPRKTWEDRAAKPEVKDTPRPWKPNKPAAKHA
EDRPAKTWKKK
NT seq
1656 nt
NT seq
+upstream
nt +downstream
nt
gtgagtgatacgacctttgcagccctaggctgcagcgaagccctgttggccgccctggcc
aagcgcggctttgaagcccccatgcccgtccaagaacagaccttcaagccgggtctcgag
ggacgcgacctgctggtgcagagccgcacgggctcgggcaagacgctggccttcggcctg
cccctgctgcaccggctgacagaagcgcgccatccccaggccctgatcctggcccccacg
cgcgaactggcacagcaggtgggcgccgagctgcacagcctcgttcccaaactgcccatc
gcctccctggtgggcggcgtggcctatccaccccagatccgctcgcttcaactgggcgcc
caggtcgtcgtcggcacccccggtcgcatcatggatcacctggagcgcggcacgctggac
cttggcaaggtgagcatgatcgtcctcgacgagtgcgatgagatgctcaacatgggcttc
ctcgaggatgtggagaagatcctctccaaggtgcccgcgggaccccagacctacctgttc
tccgccaccctgcccgcccccatcgccaagctggccaagcgcttcctcaagaaccccgtc
cagatctcactggccgaggcgggtgagcatgccgtgcatgcggacatcgcccacacgccc
gtcctggtgcccgaccatcagcaggtgcgcgccctggtgaacatcctcctgaaggatcag
cccagcgccgccctcatcttcaccaagaccaaggcccagaccgaggaagtggcggaagag
ctcaccgtgtcgggcctgcctgcggcgttcctgcacggcgacctcgcccaggccacccgc
acccgcatcctcggccagttcaaggaaggcaagttacgctacctggtggccacggatgtc
gccgcccgcggcctcgacatcggcggtctgcccctcgtcgtccacatgggcatccccacc
cagctggagagctacatccaccgcagcggccgcaccggccgtgccggcgccaagggcagc
agcatggccctggtgggttggaaggaaagccgcatcctcctggcctggagccgccgcggc
ggcctcaccctcgattggcgtgccgtgccgactccagccgaaatccgtgaagcccaggcc
gccaaactgctggatggcatccagggctccgccagtgccgccctgctccaccaggccacc
cagatgctgaaggatgccgatcccgtgcgcctcgtggcgggcctcctgggccttgtccag
gccgatcaggcctcgggattcgacctgcccaatgagccggagaaaaagcccaagtcccgc
tttgattcaccccgagagcgcaaggaaggtggcccccgcccccagcgcacgtacgccgag
cgcgctgccgcacggggaacggatcgcccggattccgccttctccaagacacgacccgat
ggcagcttcaagccccgcagcgaattcgaggaccggccccggccctacgccaagccgacc
aagccccgccccgacagcgcggaacggccccggaaaacctgggaggatcgcgccgccaag
cctgaggtgaaggacacgccgcgcccctggaagcccaacaaacccgccgccaagcacgcg
gaggacaggcccgcaaagacctggaagaagaagtag
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