Geothrix sp. PMB-07: Q9293_12660
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Entry
Q9293_12660 CDS
T09655
Name
(GenBank) sigma-54 dependent transcriptional regulator
KO
K02667
two-component system, NtrC family, response regulator PilR
Organism
gep
Geothrix sp. PMB-07
Pathway
gep02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
gep00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
Q9293_12660
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02022 Two-component system [BR:
gep02022
]
Q9293_12660
02035 Bacterial motility proteins [BR:
gep02035
]
Q9293_12660
Two-component system [BR:
gep02022
]
NtrC family
PilS-PilR (type 4 fimbriae synthesis)
Q9293_12660
Bacterial motility proteins [BR:
gep02035
]
Pilus system
Twitching motility proteins
Q9293_12660
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
Response_reg
AAA_lid_14
Sigma54_activ_2
AAA_5
AAA
AAA_16
bpMoxR
HTH_8
Mg_chelatase
MCM
AAA_3
AAA_2
AAA_7
VpsR
AAA_22
Motif
Other DBs
NCBI-ProteinID:
WLT30568
LinkDB
All DBs
Position
complement(2878608..2880062)
Genome browser
AA seq
484 aa
AA seq
DB search
MPLATTQRILLVEDEPGLREVLTLALEGAGFCCEAASGLEEGLQALREATFDGVLSDLKL
KDGSGIELLTWMKEQGLETPVVIMTAYATTETTVQALNQGAVDFITKPFKHDDLIASLKG
LLATAGPESTPPPDLGELVGVGHIMRKINALIGKVSRADTTVLLMGESGTGKEVVARLIH
RHSDRAKGPFVAVNCGALPEALLESELFGFEKGAFTGATAMKRGLFEEAGGGILFLDEIG
EMPLALQVKLLRVLQERRVRRLGATEERPMDVRVIAATNRDLRARAESGAFREDLYYRIN
ILQIEMPPLRERPEDLPVLAEHFIRRSCHKLGKPPMQLHPETMAQLLTYRFPGNVRELEN
LMERCVALNPGGPITRDLLPEGFGQSSTPEGGPPPAPLGIPAEGFDLEAWIQALKGHFLR
KALDEVGGVKTKAGKRLGMSFRAYRYWLAELGGLEALQADFPWPADFPAPVVDESGGTEG
PKEA
NT seq
1455 nt
NT seq
+upstream
nt +downstream
nt
atgccccttgccacgacccaacggatcttgctggtggaggatgaaccgggccttcgggag
gttctgaccctggccctggaaggggcgggcttctgctgtgaagccgcgtccggcctggag
gagggcctgcaggccctgcgagaagccaccttcgacggggtgctctccgacttgaagctc
aaggatggttccggcatcgagctgctcacctggatgaaggagcagggcctggagacgccg
gtggtcatcatgaccgcctacgccaccacggaaaccacggtgcaggccctcaaccagggc
gcggtggatttcatcaccaagcccttcaagcacgacgacctcatcgcctccctcaagggc
ctgctggctacggccgggcccgagtccacgccgccgccggatctgggcgagctggtgggc
gtggggcacatcatgcggaagatcaacgccctcatcggcaaggtgtcccgggctgacacc
acggtgttgctcatgggggaaagcggcacgggcaaggaagtggtggcccggctcatccac
cgtcattcggaccgcgccaagggcccctttgtggccgtgaactgcggggcgctgccagag
gccctgctggaaagtgagctgttcggtttcgagaagggcgctttcacgggtgccacggcg
atgaagcggggcctgtttgaagaggctggtggcggcatcctcttcctcgacgagatcggc
gaaatgcccctggccctccaggtgaagctgctgcgggtgctgcaggagcgccgggtgcgg
cgcctgggcgccaccgaggaacggcccatggatgtgcgcgtcatcgccgccaccaaccgc
gacctgcgggcccgagccgaatccggggccttccgggaggatctctactaccgcatcaac
atcctccagatcgagatgccgccgttgcgagaacggcccgaggacctgccggtgctggcg
gagcacttcatccgccgttcctgtcacaagctgggcaaaccgcccatgcagctgcacccg
gaaaccatggcccagctgctcacctaccgcttccccggcaacgtgcgggagctggagaac
ctcatggagcgctgtgtggcgctcaatcctggcggccccatcacccgggacctgctgccc
gagggctttggccagagcagcaccccggaaggcgggcccccgcctgcgcccctagggatc
cccgccgaaggctttgatctggaagcctggatccaggcgctcaaggggcatttcctgcgc
aaggccctggacgaggtgggcggcgtcaagaccaaggcaggcaagcgcctcggcatgagc
ttccgggcctaccgctactggctggccgaactgggcggcctggaggccctgcaggctgat
ttcccctggccggcagatttccccgctccggtggtggacgaaagcgggggaaccgaaggg
cccaaggaggcatga
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